Analysis of interatomic Contacts of Structural Units in PDB entry:
4JBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JBM entry

There are 4 chains in PDB entry 4JBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 193
B
 MET 1ALA 187
T
 G 2 C 13
R
 G 2 C 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4JBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 51Right-handed 310
Helix 2
2
A
87 96Right-handed alpha
Helix 3
3
A
99 104Right-handed alpha
Helix 4
4
B
46 50Right-handed 310
Helix 5
5
B
87 96Right-handed alpha
Helix 6
6
B
99 104Right-handed alpha
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There are 6 sheets in PDB entry 4JBM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
37 42anti-parallel
Strand 4
A
69 71parallel
Strand 5
A
63 64anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
4 11anti-parallel
Strand 4
A
56 60anti-parallel
Strand 5
A
76 79anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 185first strand
Strand 2
A
157 168anti-parallel
Strand 3
A
171 175anti-parallel
Strand 4
A
137 144parallel
Strand 5
A
127 134anti-parallel
Strand 6
A
111 123anti-parallel
Strand 7
A
157 168anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
22 32anti-parallel
Strand 3
B
37 42anti-parallel
Strand 4
B
68 71parallel
Strand 5
B
63 65anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
22 32anti-parallel
Strand 3
B
4 11anti-parallel
Strand 4
B
56 60anti-parallel
Strand 5
B
76 79anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 185first strand
Strand 2
B
157 168anti-parallel
Strand 3
B
171 175anti-parallel
Strand 4
B
137 144parallel
Strand 5
B
127 134anti-parallel
Strand 6
B
111 123anti-parallel
Strand 7
B
157 168anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il