Analysis of interatomic Contacts of Structural Units in PDB entry:
4JBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JBS entry

There are 2 chains in PDB entry 4JBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 54ARG 961
B
 VAL 55ARG 961
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 4JBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
143 145Right-handed 310
Helix 2
2
A
203 207Right-handed 310
Helix 3
3
A
260 264Right-handed 310
Helix 4
4
A
289 295Right-handed 310
Helix 5
5
A
296 315Right-handed alpha
Helix 6
6
A
346 350Right-handed alpha
Helix 7
7
A
357 377Right-handed alpha
Helix 8
8
A
385 388Right-handed 310
Helix 9
9
A
389 408Right-handed alpha
Helix 10
10
A
409 416Right-handed 310
Helix 11
11
A
417 429Right-handed alpha
Helix 12
12
A
442 448Right-handed alpha
Helix 13
13
A
455 470Right-handed alpha
Helix 14
14
A
470 485Right-handed alpha
Helix 15
15
A
491 501Right-handed alpha
Helix 16
16
A
533 544Right-handed alpha
Helix 17
17
A
624 628Right-handed 310
Helix 18
18
A
638 649Right-handed alpha
Helix 19
19
A
650 654Right-handed 310
Helix 20
20
A
655 671Right-handed alpha
Helix 21
21
A
676 682Right-handed alpha
Helix 22
22
A
685 689Right-handed 310
Helix 23
23
A
692 713Right-handed alpha
Helix 24
24
A
715 729Right-handed alpha
Helix 25
25
A
730 736Right-handed alpha
Helix 26
26
A
744 761Right-handed alpha
Helix 27
27
A
763 781Right-handed alpha
Helix 28
28
A
787 799Right-handed alpha
Helix 29
29
A
801 813Right-handed alpha
Helix 30
30
A
817 830Right-handed alpha
Helix 31
31
A
833 847Right-handed alpha
Helix 32
32
A
851 853Right-handed 310
Helix 33
33
A
854 865Right-handed alpha
Helix 34
34
A
865 879Right-handed alpha
Helix 35
35
A
879 887Right-handed alpha
Helix 36
36
A
891 903Right-handed alpha
Helix 37
37
A
907 921Right-handed alpha
Helix 38
38
A
929 960Right-handed alpha
Helix 39
39
B
203 207Right-handed 310
Helix 40
40
B
262 264Right-handed 310
Helix 41
41
B
292 295Right-handed 310
Helix 42
42
B
296 315Right-handed alpha
Helix 43
43
B
357 377Right-handed alpha
Helix 44
44
B
389 408Right-handed alpha
Helix 45
45
B
409 411Right-handed 310
Helix 46
46
B
412 429Right-handed alpha
Helix 47
47
B
442 449Right-handed alpha
Helix 48
48
B
455 468Right-handed alpha
Helix 49
49
B
470 485Right-handed alpha
Helix 50
50
B
491 501Right-handed alpha
Helix 51
51
B
535 543Right-handed alpha
Helix 52
52
B
624 628Right-handed 310
Helix 53
53
B
638 649Right-handed alpha
Helix 54
54
B
650 654Right-handed 310
Helix 55
55
B
655 672Right-handed alpha
Helix 56
56
B
676 682Right-handed alpha
Helix 57
57
B
685 689Right-handed 310
Helix 58
58
B
692 713Right-handed alpha
Helix 59
59
B
717 719Right-handed 310
Helix 60
60
B
720 729Right-handed alpha
Helix 61
61
B
730 737Right-handed alpha
Helix 62
62
B
744 760Right-handed alpha
Helix 63
63
B
763 781Right-handed alpha
Helix 64
64
B
787 799Right-handed alpha
Helix 65
65
B
801 814Right-handed alpha
Helix 66
66
B
817 830Right-handed alpha
Helix 67
67
B
833 847Right-handed alpha
Helix 68
68
B
851 853Right-handed 310
Helix 69
69
B
854 863Right-handed alpha
Helix 70
70
B
865 867Right-handed 310
Helix 71
71
B
868 879Right-handed alpha
Helix 72
72
B
879 887Right-handed alpha
Helix 73
73
B
891 903Right-handed alpha
Helix 74
74
B
907 916Right-handed alpha
Helix 75
75
B
916 921Right-handed alpha
Helix 76
76
B
928 947Right-handed alpha
Helix 77
77
B
948 961Right-handed alpha
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There are 13 sheets in PDB entry 4JBS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
116 124anti-parallel
Strand 3
A
161 171anti-parallel
Strand 4
A
90 101anti-parallel
Strand 5
A
73 85anti-parallel
Strand 6
A
219 226parallel
Strand 7
A
249 253anti-parallel
Strand 8
A
238 243anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
147 151anti-parallel
Strand 3
A
138 142anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 185first strand
Strand 2
A
191 198anti-parallel
Strand 3
A
266 269anti-parallel
Strand 4
A
231 234anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 277first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
322 328parallel
Strand 4
A
341 345parallel
Strand 5
A
335 336anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
488 490parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 613first strand
Strand 2
A
558 565anti-parallel
Strand 3
A
548 555anti-parallel
Strand 4
A
632 636parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 592first strand
Strand 2
A
601 603anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
116 124anti-parallel
Strand 3
B
162 171anti-parallel
Strand 4
B
90 98anti-parallel
Strand 5
B
77 85anti-parallel
Strand 6
B
217 226parallel
Strand 7
B
249 253anti-parallel
Strand 8
B
238 243anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
116 124anti-parallel
Strand 3
B
162 171anti-parallel
Strand 4
B
90 98anti-parallel
Strand 5
B
77 85anti-parallel
Strand 6
B
217 226parallel
Strand 7
B
259 260anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
147 151anti-parallel
Strand 3
B
138 142anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 185first strand
Strand 2
B
191 198anti-parallel
Strand 3
B
266 269anti-parallel
Strand 4
B
231 234anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 277first strand
Strand 2
B
283 288anti-parallel
Strand 3
B
322 328parallel
Strand 4
B
341 345parallel
Strand 5
B
335 336anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
488 490parallel
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