Analysis of interatomic Contacts of Structural Units in PDB entry:
4JBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JBT entry

There are 2 chains in PDB entry 4JBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 4ARG 410
B
 CYS 4ARG 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 4JBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
47 55Right-handed alpha
Helix 3
3
A
63 66Right-handed 310
Helix 4
4
A
67 72Right-handed alpha
Helix 5
5
A
81 85Right-handed 310
Helix 6
6
A
96 110Right-handed alpha
Helix 7
7
A
113 117Right-handed 310
Helix 8
8
A
118 137Right-handed alpha
Helix 9
9
A
138 141Right-handed 310
Helix 10
10
A
145 149Right-handed alpha
Helix 11
11
A
151 163Right-handed alpha
Helix 12
12
A
165 167Right-handed 310
Helix 13
13
A
168 181Right-handed alpha
Helix 14
14
A
185 210Right-handed alpha
Helix 15
15
A
214 221Right-handed alpha
Helix 16
16
A
230 263Right-handed alpha
Helix 17
17
A
263 272Right-handed alpha
Helix 18
18
A
276 289Right-handed alpha
Helix 19
19
A
319 325Right-handed alpha
Helix 20
20
A
326 331Right-handed alpha
Helix 21
21
A
359 378Right-handed alpha
Helix 22
22
A
386 390Right-handed 310
Helix 23
23
B
18 29Right-handed alpha
Helix 24
24
B
47 55Right-handed alpha
Helix 25
25
B
63 66Right-handed 310
Helix 26
26
B
67 72Right-handed alpha
Helix 27
27
B
81 85Right-handed 310
Helix 28
28
B
96 110Right-handed alpha
Helix 29
29
B
111 117Right-handed alpha
Helix 30
30
B
118 137Right-handed alpha
Helix 31
31
B
138 141Right-handed 310
Helix 32
32
B
145 149Right-handed alpha
Helix 33
33
B
151 163Right-handed alpha
Helix 34
34
B
165 167Right-handed 310
Helix 35
35
B
168 181Right-handed alpha
Helix 36
36
B
185 210Right-handed alpha
Helix 37
37
B
214 221Right-handed alpha
Helix 38
38
B
230 263Right-handed alpha
Helix 39
39
B
263 272Right-handed alpha
Helix 40
40
B
276 289Right-handed alpha
Helix 41
41
B
319 325Right-handed alpha
Helix 42
42
B
326 331Right-handed alpha
Helix 43
43
B
359 378Right-handed alpha
Helix 44
44
B
386 390Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 4JBT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
32 37parallel
Strand 3
A
40 45anti-parallel
Strand 4
A
315 318parallel
Strand 5
A
294 299anti-parallel
Strand 6
A
60 61anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
405 407anti-parallel
Strand 3
A
382 383anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
309 310anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
32 37parallel
Strand 3
B
40 45anti-parallel
Strand 4
B
315 318parallel
Strand 5
B
294 299anti-parallel
Strand 6
B
60 61anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
405 407anti-parallel
Strand 3
B
382 383anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
309 310anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il