Analysis of interatomic Contacts of Structural Units in PDB entry:
4JBW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JBW entry

There are 12 chains in PDB entry 4JBW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	SER 18	THR 509
G	ALA 2	ASN 287
A	ALA 2	VAL 371
B	ALA 2	VAL 371
M	THR 19	LYS 168
N	THR 19	LYS 168
H	SER 18	THR 509
I	ALA 2	ASN 287
C	ALA 2	VAL 371
D	ALA 2	VAL 371
O	THR 19	LYS 168
P	THR 19	LYS 168

There are152 helices in PDB entry 4JBW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	F	19	24	Right-handed alpha
Helix 2	2	F	25	36	Right-handed alpha
Helix 3	3	F	39	44	Right-handed alpha
Helix 4	4	F	44	59	Right-handed alpha
Helix 5	5	F	64	79	Right-handed alpha
Helix 6	6	F	79	90	Right-handed alpha
Helix 7	7	F	101	105	Right-handed 310
Helix 8	8	F	108	111	Right-handed 310
Helix 9	9	F	172	179	Right-handed alpha
Helix 10	10	F	179	185	Right-handed alpha
Helix 11	11	F	261	269	Right-handed alpha
Helix 12	12	F	270	307	Right-handed alpha
Helix 13	13	F	313	327	Right-handed alpha
Helix 14	14	F	328	340	Right-handed alpha
Helix 15	15	F	346	352	Right-handed alpha
Helix 16	16	F	364	393	Right-handed alpha
Helix 17	17	F	396	406	Right-handed alpha
Helix 18	18	F	409	417	Right-handed alpha
Helix 19	19	F	417	439	Right-handed alpha
Helix 20	20	F	440	448	Right-handed alpha
Helix 21	21	F	466	477	Right-handed alpha
Helix 22	22	F	483	500	Right-handed alpha
Helix 23	23	F	501	507	Right-handed alpha
Helix 24	24	G	9	40	Right-handed alpha
Helix 25	25	G	56	62	Right-handed alpha
Helix 26	26	G	80	112	Right-handed alpha
Helix 27	27	G	117	131	Right-handed alpha
Helix 28	28	G	136	151	Right-handed alpha
Helix 29	29	G	152	155	Right-handed 310
Helix 30	30	G	158	167	Right-handed alpha
Helix 31	31	G	170	182	Right-handed alpha
Helix 32	32	G	186	196	Right-handed alpha
Helix 33	33	G	198	206	Right-handed alpha
Helix 34	34	G	206	211	Right-handed alpha
Helix 35	35	G	211	229	Right-handed alpha
Helix 36	36	G	230	237	Right-handed alpha
Helix 37	37	G	239	243	Right-handed 310
Helix 38	38	G	244	249	Right-handed alpha
Helix 39	39	G	262	283	Right-handed alpha
Helix 40	40	A	41	51	Right-handed alpha
Helix 41	41	A	72	75	Right-handed 310
Helix 42	42	A	91	97	Right-handed alpha
Helix 43	43	A	97	102	Right-handed alpha
Helix 44	44	A	106	121	Right-handed alpha
Helix 45	45	A	123	127	Right-handed 310
Helix 46	46	A	130	134	Right-handed 310
Helix 47	47	A	135	151	Right-handed alpha
Helix 48	48	A	165	172	Right-handed alpha
Helix 49	49	A	172	184	Right-handed alpha
Helix 50	50	A	193	201	Right-handed alpha
Helix 51	51	A	217	224	Right-handed alpha
Helix 52	52	A	227	234	Right-handed alpha
Helix 53	53	A	286	290	Right-handed 310
Helix 54	54	B	41	51	Right-handed alpha
Helix 55	55	B	72	75	Right-handed 310
Helix 56	56	B	91	97	Right-handed alpha
Helix 57	57	B	97	102	Right-handed alpha
Helix 58	58	B	106	121	Right-handed alpha
Helix 59	59	B	123	127	Right-handed 310
Helix 60	60	B	130	134	Right-handed 310
Helix 61	61	B	135	151	Right-handed alpha
Helix 62	62	B	165	184	Right-handed alpha
Helix 63	63	B	193	201	Right-handed alpha
Helix 64	64	B	217	224	Right-handed alpha
Helix 65	65	B	227	234	Right-handed alpha
Helix 66	66	B	287	290	Right-handed 310
Helix 67	67	B	348	350	Right-handed 310
Helix 68	68	M	34	36	Right-handed 310
Helix 69	69	M	38	43	Right-handed alpha
Helix 70	70	M	94	99	Right-handed 310
Helix 71	71	M	123	129	Right-handed alpha
Helix 72	72	N	34	36	Right-handed 310
Helix 73	73	N	38	43	Right-handed alpha
Helix 74	74	N	94	99	Right-handed 310
Helix 75	75	N	123	129	Right-handed alpha
Helix 76	76	H	19	24	Right-handed alpha
Helix 77	77	H	25	36	Right-handed alpha
Helix 78	78	H	39	44	Right-handed alpha
Helix 79	79	H	44	59	Right-handed alpha
Helix 80	80	H	64	79	Right-handed alpha
Helix 81	81	H	79	89	Right-handed alpha
Helix 82	82	H	101	110	Right-handed alpha
Helix 83	83	H	172	179	Right-handed alpha
Helix 84	84	H	179	185	Right-handed alpha
Helix 85	85	H	261	268	Right-handed alpha
Helix 86	86	H	274	307	Right-handed alpha
Helix 87	87	H	313	327	Right-handed alpha
Helix 88	88	H	328	340	Right-handed alpha
Helix 89	89	H	346	352	Right-handed alpha
Helix 90	90	H	364	393	Right-handed alpha
Helix 91	91	H	396	406	Right-handed alpha
Helix 92	92	H	409	417	Right-handed alpha
Helix 93	93	H	418	439	Right-handed alpha
Helix 94	94	H	440	445	Right-handed alpha
Helix 95	95	H	466	477	Right-handed alpha
Helix 96	96	H	483	500	Right-handed alpha
Helix 97	97	H	501	508	Right-handed alpha
Helix 98	98	I	5	8	Right-handed 310
Helix 99	99	I	9	40	Right-handed alpha
Helix 100	100	I	56	62	Right-handed alpha
Helix 101	101	I	80	113	Right-handed alpha
Helix 102	102	I	117	131	Right-handed alpha
Helix 103	103	I	136	151	Right-handed alpha
Helix 104	104	I	152	155	Right-handed 310
Helix 105	105	I	158	167	Right-handed alpha
Helix 106	106	I	170	182	Right-handed alpha
Helix 107	107	I	186	196	Right-handed alpha
Helix 108	108	I	198	206	Right-handed alpha
Helix 109	109	I	206	211	Right-handed alpha
Helix 110	110	I	211	229	Right-handed alpha
Helix 111	111	I	230	237	Right-handed alpha
Helix 112	112	I	239	243	Right-handed 310
Helix 113	113	I	244	249	Right-handed alpha
Helix 114	114	I	250	252	Right-handed 310
Helix 115	115	I	261	263	Right-handed 310
Helix 116	116	I	264	269	Right-handed alpha
Helix 117	117	I	270	283	Right-handed alpha
Helix 118	118	C	41	51	Right-handed alpha
Helix 119	119	C	72	75	Right-handed 310
Helix 120	120	C	91	97	Right-handed alpha
Helix 121	121	C	97	103	Right-handed alpha
Helix 122	122	C	106	121	Right-handed alpha
Helix 123	123	C	123	127	Right-handed 310
Helix 124	124	C	130	134	Right-handed 310
Helix 125	125	C	135	151	Right-handed alpha
Helix 126	126	C	165	172	Right-handed alpha
Helix 127	127	C	172	184	Right-handed alpha
Helix 128	128	C	193	201	Right-handed alpha
Helix 129	129	C	217	224	Right-handed alpha
Helix 130	130	C	227	234	Right-handed alpha
Helix 131	131	C	287	290	Right-handed 310
Helix 132	132	D	41	51	Right-handed alpha
Helix 133	133	D	72	75	Right-handed 310
Helix 134	134	D	91	102	Right-handed alpha
Helix 135	135	D	106	121	Right-handed alpha
Helix 136	136	D	123	127	Right-handed 310
Helix 137	137	D	130	134	Right-handed 310
Helix 138	138	D	135	151	Right-handed alpha
Helix 139	139	D	165	184	Right-handed alpha
Helix 140	140	D	193	201	Right-handed alpha
Helix 141	141	D	217	224	Right-handed alpha
Helix 142	142	D	227	234	Right-handed alpha
Helix 143	143	D	286	290	Right-handed 310
Helix 144	144	D	348	352	Right-handed 310
Helix 145	145	O	34	36	Right-handed 310
Helix 146	146	O	38	43	Right-handed alpha
Helix 147	147	O	94	99	Right-handed 310
Helix 148	148	O	123	129	Right-handed alpha
Helix 149	149	P	34	36	Right-handed 310
Helix 150	150	P	38	43	Right-handed alpha
Helix 151	151	P	94	99	Right-handed 310
Helix 152	152	P	123	129	Right-handed alpha

There are 41 sheets in PDB entry 4JBW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	115	first strand
Strand 2	F	203	209	anti-parallel
Strand 3	F	120	124	anti-parallel
Strand 4	F	131	137	anti-parallel
Strand 5	F	143	149	anti-parallel
Strand 6	F	160	161	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	115	first strand
Strand 2	F	203	209	anti-parallel
Strand 3	F	195	198	anti-parallel
Strand 4	F	187	189	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	211	213	first strand
Strand 2	F	219	221	anti-parallel
Strand 3	F	227	231	anti-parallel
Strand 4	F	236	239	anti-parallel
Strand 5	F	250	251	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	25	first strand
Strand 2	A	4	13	anti-parallel
Strand 3	A	57	62	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	154	158	parallel
Strand 3	A	186	191	parallel
Strand 4	A	31	35	parallel
Strand 5	A	203	208	parallel
Strand 6	A	211	216	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	282	285	anti-parallel
Strand 3	A	353	355	anti-parallel
Strand 4	A	361	362	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	249	first strand
Strand 2	A	254	257	anti-parallel
Strand 3	A	265	268	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	345	346	anti-parallel
Strand 3	A	299	300	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	309	first strand
Strand 2	A	313	319	anti-parallel
Strand 3	A	326	332	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	25	first strand
Strand 2	B	4	13	anti-parallel
Strand 3	B	57	62	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	154	158	parallel
Strand 3	B	187	191	parallel
Strand 4	B	31	35	parallel
Strand 5	B	203	208	parallel
Strand 6	B	211	216	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	268	first strand
Strand 2	B	254	257	anti-parallel
Strand 3	B	240	249	anti-parallel
Strand 4	B	280	285	anti-parallel
Strand 5	B	352	355	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	345	346	anti-parallel
Strand 3	B	299	300	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	309	first strand
Strand 2	B	313	319	anti-parallel
Strand 3	B	326	332	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	20	23	first strand
Strand 2	M	162	167	anti-parallel
Strand 3	M	148	151	anti-parallel

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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	112	113	first strand
Strand 2	M	65	70	anti-parallel
Strand 3	M	76	81	anti-parallel
Strand 4	M	86	90	anti-parallel
Strand 5	M	136	140	anti-parallel
Strand 6	M	48	54	anti-parallel
Strand 7	M	28	32	anti-parallel
Strand 8	M	155	156	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	58	60	first strand
Strand 2	M	118	122	anti-parallel
Strand 3	M	103	105	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	20	23	first strand
Strand 2	N	162	167	anti-parallel
Strand 3	N	148	151	anti-parallel

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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	112	113	first strand
Strand 2	N	65	70	anti-parallel
Strand 3	N	76	81	anti-parallel
Strand 4	N	86	90	anti-parallel
Strand 5	N	136	140	anti-parallel
Strand 6	N	48	54	anti-parallel
Strand 7	N	28	32	anti-parallel
Strand 8	N	155	156	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	118	122	anti-parallel
Strand 3	N	103	105	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	136	first strand
Strand 2	H	120	122	anti-parallel
Strand 3	H	203	205	anti-parallel
Strand 4	H	195	198	anti-parallel
Strand 5	H	187	189	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	145	first strand
Strand 2	H	160	161	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	219	220	first strand
Strand 2	H	227	230	anti-parallel
Strand 3	H	237	238	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	25	first strand
Strand 2	C	4	13	anti-parallel
Strand 3	C	57	62	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	154	158	parallel
Strand 3	C	186	191	parallel
Strand 4	C	31	35	parallel
Strand 5	C	203	208	parallel
Strand 6	C	211	216	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	242	first strand
Strand 2	C	282	285	anti-parallel
Strand 3	C	352	355	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	249	first strand
Strand 2	C	254	257	anti-parallel
Strand 3	C	265	268	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	345	346	anti-parallel
Strand 3	C	299	300	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	309	first strand
Strand 2	C	313	319	anti-parallel
Strand 3	C	326	332	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	25	first strand
Strand 2	D	4	13	anti-parallel
Strand 3	D	57	62	anti-parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	154	158	parallel
Strand 3	D	186	191	parallel
Strand 4	D	31	35	parallel
Strand 5	D	203	208	parallel
Strand 6	D	211	216	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	243	first strand
Strand 2	D	282	285	anti-parallel
Strand 3	D	353	355	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	249	first strand
Strand 2	D	254	257	anti-parallel
Strand 3	D	265	268	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	292	first strand
Strand 2	D	345	346	anti-parallel
Strand 3	D	299	300	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	309	first strand
Strand 2	D	313	319	anti-parallel
Strand 3	D	326	332	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	20	23	first strand
Strand 2	O	162	167	anti-parallel
Strand 3	O	148	151	anti-parallel

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There are 8 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	112	113	first strand
Strand 2	O	65	70	anti-parallel
Strand 3	O	76	81	anti-parallel
Strand 4	O	86	90	anti-parallel
Strand 5	O	136	140	anti-parallel
Strand 6	O	48	54	anti-parallel
Strand 7	O	28	32	anti-parallel
Strand 8	O	155	156	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	60	first strand
Strand 2	O	118	122	anti-parallel
Strand 3	O	103	105	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	20	23	first strand
Strand 2	P	162	166	anti-parallel

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There are 8 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	112	113	first strand
Strand 2	P	65	70	anti-parallel
Strand 3	P	76	81	anti-parallel
Strand 4	P	86	90	anti-parallel
Strand 5	P	136	140	anti-parallel
Strand 6	P	48	54	anti-parallel
Strand 7	P	28	32	anti-parallel
Strand 8	P	155	156	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	58	60	first strand
Strand 2	P	118	122	anti-parallel
Strand 3	P	103	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JBW

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JBW