Analysis of interatomic Contacts of Structural Units in PDB entry:
4JC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JC0 entry

There are 2 chains in PDB entry 4JC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2HIS 433
B
 VAL 3LEU 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4JC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
51 56Right-handed alpha
Helix 3
3
A
56 65Right-handed alpha
Helix 4
4
A
79 83Right-handed alpha
Helix 5
5
A
84 92Right-handed alpha
Helix 6
6
A
156 160Right-handed 310
Helix 7
7
A
168 182Right-handed alpha
Helix 8
8
A
193 197Right-handed 310
Helix 9
9
A
206 215Right-handed alpha
Helix 10
10
A
229 233Right-handed 310
Helix 11
11
A
234 244Right-handed alpha
Helix 12
12
A
259 267Right-handed alpha
Helix 13
13
A
271 286Right-handed alpha
Helix 14
14
A
303 318Right-handed alpha
Helix 15
15
A
343 368Right-handed alpha
Helix 16
16
B
14 24Right-handed alpha
Helix 17
17
B
51 56Right-handed alpha
Helix 18
18
B
56 65Right-handed alpha
Helix 19
19
B
79 83Right-handed alpha
Helix 20
20
B
84 92Right-handed alpha
Helix 21
21
B
156 160Right-handed 310
Helix 22
22
B
168 182Right-handed alpha
Helix 23
23
B
193 197Right-handed 310
Helix 24
24
B
206 215Right-handed alpha
Helix 25
25
B
229 233Right-handed 310
Helix 26
26
B
234 244Right-handed alpha
Helix 27
27
B
259 267Right-handed alpha
Helix 28
28
B
271 286Right-handed alpha
Helix 29
29
B
303 318Right-handed alpha
Helix 30
30
B
343 368Right-handed alpha
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There are 8 sheets in PDB entry 4JC0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
40 45parallel
Strand 3
A
73 78parallel
Strand 4
A
97 99parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
139 146anti-parallel
Strand 3
A
186 191parallel
Strand 4
A
222 225parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
290 297parallel
Strand 3
A
321 326parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 382first strand
Strand 2
A
385 390anti-parallel
Strand 3
A
401 404anti-parallel
Strand 4
A
424 429parallel
Strand 5
A
412 421anti-parallel
Strand 6
A
373 382anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
40 45parallel
Strand 3
B
73 78parallel
Strand 4
B
97 99parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
139 146anti-parallel
Strand 3
B
186 191parallel
Strand 4
B
222 225parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 252first strand
Strand 2
B
290 297parallel
Strand 3
B
321 326parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 382first strand
Strand 2
B
385 390anti-parallel
Strand 3
B
401 404anti-parallel
Strand 4
B
424 429parallel
Strand 5
B
412 421anti-parallel
Strand 6
B
373 382anti-parallel
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