Analysis of interatomic Contacts of Structural Units in PDB entry:
4JC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JC8 entry

There are 2 chains in PDB entry 4JC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ALA 654
B
 ALA 5ALA 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 4JC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 27Right-handed alpha
Helix 2
2
A
36 44Right-handed alpha
Helix 3
3
A
48 55Right-handed alpha
Helix 4
4
A
64 66Right-handed 310
Helix 5
5
A
83 99Right-handed alpha
Helix 6
6
A
116 126Right-handed alpha
Helix 7
7
A
127 130Right-handed 310
Helix 8
8
A
155 162Right-handed alpha
Helix 9
9
A
166 184Right-handed alpha
Helix 10
10
A
193 211Right-handed alpha
Helix 11
11
A
239 241Right-handed 310
Helix 12
12
A
242 247Right-handed alpha
Helix 13
13
A
251 260Right-handed alpha
Helix 14
14
A
271 275Right-handed alpha
Helix 15
15
A
306 313Right-handed alpha
Helix 16
16
A
316 318Right-handed 310
Helix 17
17
A
319 337Right-handed alpha
Helix 18
18
A
345 378Right-handed alpha
Helix 19
19
A
380 396Right-handed alpha
Helix 20
20
A
398 401Right-handed 310
Helix 21
21
A
402 412Right-handed alpha
Helix 22
22
A
415 430Right-handed alpha
Helix 23
23
A
434 450Right-handed alpha
Helix 24
24
A
452 463Right-handed alpha
Helix 25
25
A
471 475Right-handed 310
Helix 26
26
A
491 499Right-handed alpha
Helix 27
27
A
513 519Right-handed 310
Helix 28
28
A
523 534Right-handed alpha
Helix 29
29
A
534 541Right-handed alpha
Helix 30
30
A
565 570Right-handed alpha
Helix 31
31
A
613 627Right-handed alpha
Helix 32
32
A
642 653Right-handed alpha
Helix 33
33
B
8 26Right-handed alpha
Helix 34
34
B
36 47Right-handed alpha
Helix 35
35
B
48 55Right-handed alpha
Helix 36
36
B
83 99Right-handed alpha
Helix 37
37
B
116 126Right-handed alpha
Helix 38
38
B
127 130Right-handed 310
Helix 39
39
B
155 162Right-handed alpha
Helix 40
40
B
166 184Right-handed alpha
Helix 41
41
B
193 211Right-handed alpha
Helix 42
42
B
239 241Right-handed 310
Helix 43
43
B
242 247Right-handed alpha
Helix 44
44
B
251 260Right-handed alpha
Helix 45
45
B
271 275Right-handed alpha
Helix 46
46
B
306 313Right-handed alpha
Helix 47
47
B
316 318Right-handed 310
Helix 48
48
B
319 337Right-handed alpha
Helix 49
49
B
346 354Right-handed alpha
Helix 50
50
B
358 379Right-handed alpha
Helix 51
51
B
380 396Right-handed alpha
Helix 52
52
B
398 401Right-handed 310
Helix 53
53
B
402 412Right-handed alpha
Helix 54
54
B
415 430Right-handed alpha
Helix 55
55
B
434 450Right-handed alpha
Helix 56
56
B
452 463Right-handed alpha
Helix 57
57
B
471 475Right-handed 310
Helix 58
58
B
491 499Right-handed alpha
Helix 59
59
B
513 519Right-handed 310
Helix 60
60
B
523 534Right-handed alpha
Helix 61
61
B
534 541Right-handed alpha
Helix 62
62
B
568 572Right-handed 310
Helix 63
63
B
613 627Right-handed alpha
Helix 64
64
B
642 653Right-handed alpha
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There are 6 sheets in PDB entry 4JC8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 62first strand
Strand 2
A
31 35parallel
Strand 3
A
74 80parallel
Strand 4
A
106 112parallel
Strand 5
A
132 136parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
148 150anti-parallel
Strand 3
A
631 637parallel
Strand 4
A
602 609parallel
Strand 5
A
230 237parallel
Strand 6
A
188 192parallel
Strand 7
A
576 580anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 270first strand
Strand 2
A
297 301anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 62first strand
Strand 2
B
31 35parallel
Strand 3
B
74 80parallel
Strand 4
B
106 112parallel
Strand 5
B
132 136parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 145first strand
Strand 2
B
148 150anti-parallel
Strand 3
B
631 637parallel
Strand 4
B
602 609parallel
Strand 5
B
230 237parallel
Strand 6
B
188 192parallel
Strand 7
B
576 580anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 270first strand
Strand 2
B
297 301anti-parallel
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