Analysis of interatomic Contacts of Structural Units in PDB entry:
4JCE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JCE entry

There are 5 chains in PDB entry 4JCE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 24	LYS 288
B	VAL 24	LYS 288
C	GLU 25	LYS 288
D	VAL 24	LYS 288
E	VAL 24	SER 254

There are 31 helices in PDB entry 4JCE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	32	34	Right-handed 310
Helix 2	2	A	73	77	Right-handed 310
Helix 3	3	A	113	119	Right-handed 310
Helix 4	4	A	175	180	Right-handed 310
Helix 5	5	A	196	198	Right-handed 310
Helix 6	6	A	246	248	Right-handed 310
Helix 7	7	B	32	34	Right-handed 310
Helix 8	8	B	73	77	Right-handed 310
Helix 9	9	B	113	119	Right-handed 310
Helix 10	10	B	175	180	Right-handed 310
Helix 11	11	B	196	198	Right-handed 310
Helix 12	12	B	246	248	Right-handed 310
Helix 13	13	C	32	34	Right-handed 310
Helix 14	14	C	73	77	Right-handed 310
Helix 15	15	C	113	119	Right-handed 310
Helix 16	16	C	175	180	Right-handed 310
Helix 17	17	C	196	198	Right-handed 310
Helix 18	18	C	246	248	Right-handed 310
Helix 19	19	D	32	34	Right-handed 310
Helix 20	20	D	66	70	Right-handed 310
Helix 21	21	D	73	77	Right-handed 310
Helix 22	22	D	113	119	Right-handed 310
Helix 23	23	D	175	180	Right-handed 310
Helix 24	24	D	196	198	Right-handed 310
Helix 25	25	D	246	248	Right-handed 310
Helix 26	26	E	32	34	Right-handed 310
Helix 27	27	E	73	77	Right-handed 310
Helix 28	28	E	113	119	Right-handed 310
Helix 29	29	E	175	180	Right-handed 310
Helix 30	30	E	196	198	Right-handed 310
Helix 31	31	E	246	248	Right-handed 310

There are 25 sheets in PDB entry 4JCE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	29	first strand
Strand 2	A	275	288	anti-parallel
Strand 3	A	36	43	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	29	first strand
Strand 2	A	275	288	anti-parallel
Strand 3	A	99	112	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	86	first strand
Strand 2	A	250	263	anti-parallel
Strand 3	A	269	273	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	86	first strand
Strand 2	A	250	263	anti-parallel
Strand 3	A	140	147	anti-parallel
Strand 4	A	210	217	anti-parallel
Strand 5	E	225	229	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	188	first strand
Strand 2	A	152	155	anti-parallel
Strand 3	A	200	202	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	229	first strand
Strand 2	B	210	217	anti-parallel
Strand 3	B	140	147	anti-parallel
Strand 4	B	250	263	anti-parallel
Strand 5	B	81	86	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	229	first strand
Strand 2	B	210	217	anti-parallel
Strand 3	B	140	147	anti-parallel
Strand 4	B	250	263	anti-parallel
Strand 5	B	269	273	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	275	288	anti-parallel
Strand 3	B	36	43	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	275	288	anti-parallel
Strand 3	B	100	112	anti-parallel
Strand 4	B	234	235	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	188	first strand
Strand 2	B	152	155	anti-parallel
Strand 3	B	200	202	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	229	first strand
Strand 2	C	210	217	anti-parallel
Strand 3	C	140	147	anti-parallel
Strand 4	C	250	263	anti-parallel
Strand 5	C	81	86	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	229	first strand
Strand 2	C	210	217	anti-parallel
Strand 3	C	140	147	anti-parallel
Strand 4	C	250	263	anti-parallel
Strand 5	C	269	273	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	275	287	anti-parallel
Strand 3	C	36	43	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	275	287	anti-parallel
Strand 3	C	100	112	anti-parallel
Strand 4	C	234	235	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	188	first strand
Strand 2	C	152	155	anti-parallel
Strand 3	C	200	202	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	229	first strand
Strand 2	D	210	217	anti-parallel
Strand 3	D	140	147	anti-parallel
Strand 4	D	250	263	anti-parallel
Strand 5	D	81	86	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	229	first strand
Strand 2	D	210	217	anti-parallel
Strand 3	D	140	147	anti-parallel
Strand 4	D	250	263	anti-parallel
Strand 5	D	269	273	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	29	first strand
Strand 2	D	275	288	anti-parallel
Strand 3	D	36	43	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	29	first strand
Strand 2	D	275	288	anti-parallel
Strand 3	D	100	112	anti-parallel
Strand 4	D	234	235	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	188	first strand
Strand 2	D	152	155	anti-parallel
Strand 3	D	200	202	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	229	first strand
Strand 2	E	210	217	anti-parallel
Strand 3	E	140	147	anti-parallel
Strand 4	E	250	263	anti-parallel
Strand 5	E	81	86	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	229	first strand
Strand 2	E	210	217	anti-parallel
Strand 3	E	140	147	anti-parallel
Strand 4	E	250	263	anti-parallel
Strand 5	E	269	273	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	29	first strand
Strand 2	E	275	288	anti-parallel
Strand 3	E	36	43	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	29	first strand
Strand 2	E	275	288	anti-parallel
Strand 3	E	100	112	anti-parallel
Strand 4	E	234	235	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	188	first strand
Strand 2	E	152	155	anti-parallel
Strand 3	E	200	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JCE

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JCE