Analysis of interatomic Contacts of Structural Units in PDB entry:
4JCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JCI entry

There are 2 chains in PDB entry 4JCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR -3ALA 309
B
 MET 1ILE 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4JCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 42Right-handed alpha
Helix 2
2
A
42 51Right-handed alpha
Helix 3
3
A
88 102Right-handed alpha
Helix 4
4
A
175 177Right-handed 310
Helix 5
5
A
178 196Right-handed alpha
Helix 6
6
A
200 204Right-handed 310
Helix 7
7
A
236 250Right-handed alpha
Helix 8
8
B
30 42Right-handed alpha
Helix 9
9
B
42 51Right-handed alpha
Helix 10
10
B
88 102Right-handed alpha
Helix 11
11
B
175 177Right-handed 310
Helix 12
12
B
178 196Right-handed alpha
Helix 13
13
B
200 204Right-handed 310
Helix 14
14
B
236 250Right-handed alpha
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There are 2 sheets in PDB entry 4JCI. Click on sheet of interest to get list of strands forming it: A, B,

There are 32 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 147first strand
Strand 2
A
151 159anti-parallel
Strand 3
A
163 168anti-parallel
Strand 4
A
208 213parallel
Strand 5
A
220 226anti-parallel
Strand 6
A
259 262parallel
Strand 7
A
268 276anti-parallel
Strand 8
A
279 286anti-parallel
Strand 9
A
129 132anti-parallel
Strand 10
A
119 123anti-parallel
Strand 11
A
108 113anti-parallel
Strand 12
A
74 79parallel
Strand 13
A
60 65anti-parallel
Strand 14
A
14 21parallel
Strand 15
A
2 11anti-parallel
Strand 16
A
288 298anti-parallel
Strand 17
B
288 298anti-parallel
Strand 18
B
2 11anti-parallel
Strand 19
B
14 21anti-parallel
Strand 20
B
60 65parallel
Strand 21
B
74 79anti-parallel
Strand 22
B
108 114parallel
Strand 23
B
117 123anti-parallel
Strand 24
B
129 132anti-parallel
Strand 25
B
279 286anti-parallel
Strand 26
B
268 276anti-parallel
Strand 27
B
259 262anti-parallel
Strand 28
B
220 226parallel
Strand 29
B
208 213anti-parallel
Strand 30
B
163 167parallel
Strand 31
B
151 159anti-parallel
Strand 32
B
137 147anti-parallel
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There are 26 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
220 226anti-parallel
Strand 3
A
259 262parallel
Strand 4
A
268 276anti-parallel
Strand 5
A
279 286anti-parallel
Strand 6
A
129 132anti-parallel
Strand 7
A
119 123anti-parallel
Strand 8
A
108 113anti-parallel
Strand 9
A
74 79parallel
Strand 10
A
60 65anti-parallel
Strand 11
A
14 21parallel
Strand 12
A
2 11anti-parallel
Strand 13
A
288 298anti-parallel
Strand 14
B
288 298anti-parallel
Strand 15
B
2 11anti-parallel
Strand 16
B
14 21anti-parallel
Strand 17
B
60 65parallel
Strand 18
B
74 79anti-parallel
Strand 19
B
108 114parallel
Strand 20
B
117 123anti-parallel
Strand 21
B
129 132anti-parallel
Strand 22
B
279 286anti-parallel
Strand 23
B
268 276anti-parallel
Strand 24
B
259 262anti-parallel
Strand 25
B
220 226parallel
Strand 26
B
230 231anti-parallel
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