Analysis of interatomic Contacts of Structural Units in PDB entry:
4JCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JCJ entry

There are 3 chains in PDB entry 4JCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 14ASN 327
B
 LEU 13THR 328
C
 LEU 13THR 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4JCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 43Right-handed 310
Helix 2
2
A
51 55Right-handed 310
Helix 3
3
A
67 75Right-handed alpha
Helix 4
4
A
103 105Right-handed 310
Helix 5
5
B
39 43Right-handed 310
Helix 6
6
B
67 76Right-handed alpha
Helix 7
7
B
130 135Right-handed alpha
Helix 8
8
C
51 55Right-handed 310
Helix 9
9
C
67 76Right-handed alpha
Helix 10
10
C
101 105Right-handed 310
Helix 11
11
C
130 134Right-handed alpha
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There are 10 sheets in PDB entry 4JCJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
319 326anti-parallel
Strand 4
A
57 61anti-parallel
Strand 5
A
64 66anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
91 95anti-parallel
Strand 3
A
308 309anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
119 122anti-parallel
Strand 3
A
302 303anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
28 32anti-parallel
Strand 3
B
324 326anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
57 61anti-parallel
Strand 3
B
319 321anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 101first strand
Strand 2
B
91 95anti-parallel
Strand 3
B
308 309anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
119 121anti-parallel
Strand 3
B
302 303anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 38first strand
Strand 2
C
28 32anti-parallel
Strand 3
C
319 326anti-parallel
Strand 4
C
57 61anti-parallel
Strand 5
C
64 66anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 100first strand
Strand 2
C
91 95anti-parallel
Strand 3
C
308 309anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 129first strand
Strand 2
C
119 123anti-parallel
Strand 3
C
302 303anti-parallel
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