Analysis of interatomic Contacts of Structural Units in PDB entry:
4JCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JCL entry

There is 1 chain in PDB entry 4JCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASN 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4JCL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
29 33Right-handed 310
Helix 3
3
A
35 39Right-handed 310
Helix 4
4
A
53 63Right-handed alpha
Helix 5
5
A
64 69Right-handed alpha
Helix 6
6
A
114 128Right-handed alpha
Helix 7
7
A
185 192Right-handed alpha
Helix 8
8
A
204 221Right-handed alpha
Helix 9
9
A
230 234Right-handed 310
Helix 10
10
A
235 248Right-handed alpha
Helix 11
11
A
267 277Right-handed alpha
Helix 12
12
A
283 295Right-handed alpha
Helix 13
13
A
300 315Right-handed alpha
Helix 14
14
A
317 320Right-handed 310
Helix 15
15
A
340 353Right-handed alpha
Helix 16
16
A
362 366Right-handed 310
Helix 17
17
A
373 377Right-handed 310
Helix 18
18
A
386 396Right-handed alpha
Helix 19
19
A
397 402Right-handed alpha
Helix 20
20
A
402 408Right-handed alpha
Helix 21
21
A
538 540Right-handed 310
Helix 22
22
A
611 615Right-handed 310
Helix 23
23
A
618 622Right-handed 310
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There are 13 sheets in PDB entry 4JCL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
254 257parallel
Strand 3
A
225 228parallel
Strand 4
A
131 136parallel
Strand 5
A
73 76parallel
Strand 6
A
17 20parallel
Strand 7
A
356 360parallel
Strand 8
A
322 323parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
102 108anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
92 94anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
197 199anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
162 165anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 415first strand
Strand 2
A
419 426anti-parallel
Strand 3
A
429 436anti-parallel
Strand 4
A
488 493anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 445first strand
Strand 2
A
481 483anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 457first strand
Strand 2
A
470 472anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 506first strand
Strand 2
A
515 521anti-parallel
Strand 3
A
549 553anti-parallel
Strand 4
A
542 546anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 510first strand
Strand 2
A
577 582parallel
Strand 3
A
560 567anti-parallel
Strand 4
A
529 532anti-parallel
Strand 5
A
535 537anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 644first strand
Strand 2
A
587 595anti-parallel
Strand 3
A
678 684parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
604 609first strand
Strand 2
A
648 657anti-parallel
Strand 3
A
660 663anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
604 609first strand
Strand 2
A
648 657anti-parallel
Strand 3
A
669 672anti-parallel
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