Analysis of interatomic Contacts of Structural Units in PDB entry:
4JCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JCM entry

There is 1 chain in PDB entry 4JCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6ARG 674
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4JCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
29 33Right-handed 310
Helix 3
3
A
35 39Right-handed 310
Helix 4
4
A
40 44Right-handed 310
Helix 5
5
A
53 63Right-handed alpha
Helix 6
6
A
64 69Right-handed alpha
Helix 7
7
A
111 125Right-handed alpha
Helix 8
8
A
141 145Right-handed alpha
Helix 9
9
A
176 183Right-handed alpha
Helix 10
10
A
195 212Right-handed alpha
Helix 11
11
A
221 225Right-handed 310
Helix 12
12
A
226 241Right-handed alpha
Helix 13
13
A
256 266Right-handed alpha
Helix 14
14
A
272 283Right-handed alpha
Helix 15
15
A
289 304Right-handed alpha
Helix 16
16
A
306 309Right-handed 310
Helix 17
17
A
329 342Right-handed alpha
Helix 18
18
A
351 355Right-handed 310
Helix 19
19
A
375 385Right-handed alpha
Helix 20
20
A
386 391Right-handed alpha
Helix 21
21
A
391 397Right-handed alpha
Helix 22
22
A
597 601Right-handed 310
Helix 23
23
A
604 608Right-handed 310
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There are 12 sheets in PDB entry 4JCM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
244 247parallel
Strand 3
A
216 219parallel
Strand 4
A
128 133parallel
Strand 5
A
73 76parallel
Strand 6
A
17 19parallel
Strand 7
A
345 349parallel
Strand 8
A
311 312parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
99 105anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
188 190anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
153 156anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 404first strand
Strand 2
A
408 415anti-parallel
Strand 3
A
418 425anti-parallel
Strand 4
A
477 482anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 434first strand
Strand 2
A
470 472anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 446first strand
Strand 2
A
459 461anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 496first strand
Strand 2
A
505 511anti-parallel
Strand 3
A
536 540anti-parallel
Strand 4
A
528 532anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
564 568parallel
Strand 3
A
547 554anti-parallel
Strand 4
A
519 522anti-parallel
Strand 5
A
525 526anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 630first strand
Strand 2
A
573 581anti-parallel
Strand 3
A
666 671parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 595first strand
Strand 2
A
634 642anti-parallel
Strand 3
A
648 650anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 595first strand
Strand 2
A
634 642anti-parallel
Strand 3
A
656 659anti-parallel
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