Analysis of interatomic Contacts of Structural Units in PDB entry:
4JCR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JCR entry

There are 14 chains in PDB entry 4JCR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 13	LYS 190
B	ILE 13	LYS 190
C	ILE 13	LYS 190
D	ILE 13	LYS 190
E	ILE 13	LYS 190
F	ILE 13	LYS 190
G	ILE 13	LYS 190
H	ILE 13	LYS 190
I	ILE 13	LYS 190
J	ILE 13	LYS 190
K	ILE 13	LYS 190
L	ILE 13	LYS 190
M	ILE 13	LYS 190
N	ILE 13	LYS 190

There are140 helices in PDB entry 4JCR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	21	Right-handed alpha
Helix 2	2	A	31	49	Right-handed alpha
Helix 3	3	A	63	77	Right-handed alpha
Helix 4	4	A	91	98	Right-handed alpha
Helix 5	5	A	99	100	Right-handed 310
Helix 6	6	A	101	103	Right-handed 310
Helix 7	7	A	129	152	Right-handed alpha
Helix 8	8	A	154	162	Right-handed alpha
Helix 9	9	A	169	176	Right-handed alpha
Helix 10	10	A	185	189	Right-handed 310
Helix 11	11	B	15	21	Right-handed alpha
Helix 12	12	B	31	49	Right-handed alpha
Helix 13	13	B	63	77	Right-handed alpha
Helix 14	14	B	91	98	Right-handed alpha
Helix 15	15	B	99	100	Right-handed 310
Helix 16	16	B	101	103	Right-handed 310
Helix 17	17	B	129	152	Right-handed alpha
Helix 18	18	B	154	162	Right-handed alpha
Helix 19	19	B	170	176	Right-handed alpha
Helix 20	20	B	185	189	Right-handed 310
Helix 21	21	C	15	21	Right-handed alpha
Helix 22	22	C	31	49	Right-handed alpha
Helix 23	23	C	63	77	Right-handed alpha
Helix 24	24	C	91	98	Right-handed alpha
Helix 25	25	C	99	100	Right-handed 310
Helix 26	26	C	101	103	Right-handed 310
Helix 27	27	C	129	152	Right-handed alpha
Helix 28	28	C	154	162	Right-handed alpha
Helix 29	29	C	169	176	Right-handed alpha
Helix 30	30	C	185	189	Right-handed 310
Helix 31	31	D	15	21	Right-handed alpha
Helix 32	32	D	31	49	Right-handed alpha
Helix 33	33	D	63	77	Right-handed alpha
Helix 34	34	D	91	98	Right-handed alpha
Helix 35	35	D	99	100	Right-handed 310
Helix 36	36	D	101	103	Right-handed 310
Helix 37	37	D	129	152	Right-handed alpha
Helix 38	38	D	154	162	Right-handed alpha
Helix 39	39	D	169	176	Right-handed alpha
Helix 40	40	D	185	189	Right-handed 310
Helix 41	41	E	15	21	Right-handed alpha
Helix 42	42	E	31	49	Right-handed alpha
Helix 43	43	E	63	77	Right-handed alpha
Helix 44	44	E	91	98	Right-handed alpha
Helix 45	45	E	99	100	Right-handed 310
Helix 46	46	E	101	103	Right-handed 310
Helix 47	47	E	129	152	Right-handed alpha
Helix 48	48	E	154	162	Right-handed alpha
Helix 49	49	E	170	176	Right-handed alpha
Helix 50	50	E	185	189	Right-handed 310
Helix 51	51	F	15	21	Right-handed alpha
Helix 52	52	F	31	49	Right-handed alpha
Helix 53	53	F	63	77	Right-handed alpha
Helix 54	54	F	91	98	Right-handed alpha
Helix 55	55	F	99	100	Right-handed 310
Helix 56	56	F	101	103	Right-handed 310
Helix 57	57	F	129	152	Right-handed alpha
Helix 58	58	F	154	162	Right-handed alpha
Helix 59	59	F	170	176	Right-handed alpha
Helix 60	60	F	185	189	Right-handed 310
Helix 61	61	G	15	21	Right-handed alpha
Helix 62	62	G	31	49	Right-handed alpha
Helix 63	63	G	63	77	Right-handed alpha
Helix 64	64	G	91	98	Right-handed alpha
Helix 65	65	G	99	100	Right-handed 310
Helix 66	66	G	101	103	Right-handed 310
Helix 67	67	G	129	152	Right-handed alpha
Helix 68	68	G	154	162	Right-handed alpha
Helix 69	69	G	170	176	Right-handed alpha
Helix 70	70	G	185	189	Right-handed 310
Helix 71	71	H	15	21	Right-handed alpha
Helix 72	72	H	31	49	Right-handed alpha
Helix 73	73	H	63	77	Right-handed alpha
Helix 74	74	H	91	98	Right-handed alpha
Helix 75	75	H	99	100	Right-handed 310
Helix 76	76	H	101	103	Right-handed 310
Helix 77	77	H	129	152	Right-handed alpha
Helix 78	78	H	154	162	Right-handed alpha
Helix 79	79	H	170	176	Right-handed alpha
Helix 80	80	H	185	189	Right-handed 310
Helix 81	81	I	15	21	Right-handed alpha
Helix 82	82	I	31	49	Right-handed alpha
Helix 83	83	I	63	77	Right-handed alpha
Helix 84	84	I	91	98	Right-handed alpha
Helix 85	85	I	99	100	Right-handed 310
Helix 86	86	I	101	103	Right-handed 310
Helix 87	87	I	129	152	Right-handed alpha
Helix 88	88	I	154	162	Right-handed alpha
Helix 89	89	I	169	176	Right-handed alpha
Helix 90	90	I	185	189	Right-handed 310
Helix 91	91	J	15	20	Right-handed alpha
Helix 92	92	J	31	49	Right-handed alpha
Helix 93	93	J	63	77	Right-handed alpha
Helix 94	94	J	91	98	Right-handed alpha
Helix 95	95	J	99	100	Right-handed 310
Helix 96	96	J	101	103	Right-handed 310
Helix 97	97	J	129	152	Right-handed alpha
Helix 98	98	J	154	162	Right-handed alpha
Helix 99	99	J	170	176	Right-handed alpha
Helix 100	100	J	185	189	Right-handed 310
Helix 101	101	K	15	21	Right-handed alpha
Helix 102	102	K	31	49	Right-handed alpha
Helix 103	103	K	63	77	Right-handed alpha
Helix 104	104	K	91	98	Right-handed alpha
Helix 105	105	K	99	100	Right-handed 310
Helix 106	106	K	101	103	Right-handed 310
Helix 107	107	K	129	152	Right-handed alpha
Helix 108	108	K	154	162	Right-handed alpha
Helix 109	109	K	169	176	Right-handed alpha
Helix 110	110	K	185	189	Right-handed 310
Helix 111	111	L	15	21	Right-handed alpha
Helix 112	112	L	31	49	Right-handed alpha
Helix 113	113	L	63	77	Right-handed alpha
Helix 114	114	L	91	98	Right-handed alpha
Helix 115	115	L	99	100	Right-handed 310
Helix 116	116	L	101	103	Right-handed 310
Helix 117	117	L	129	152	Right-handed alpha
Helix 118	118	L	154	162	Right-handed alpha
Helix 119	119	L	170	176	Right-handed alpha
Helix 120	120	L	185	189	Right-handed 310
Helix 121	121	M	15	21	Right-handed alpha
Helix 122	122	M	31	49	Right-handed alpha
Helix 123	123	M	63	77	Right-handed alpha
Helix 124	124	M	91	98	Right-handed alpha
Helix 125	125	M	99	100	Right-handed 310
Helix 126	126	M	101	103	Right-handed 310
Helix 127	127	M	129	152	Right-handed alpha
Helix 128	128	M	154	162	Right-handed alpha
Helix 129	129	M	169	176	Right-handed alpha
Helix 130	130	M	185	189	Right-handed 310
Helix 131	131	N	15	21	Right-handed alpha
Helix 132	132	N	31	49	Right-handed alpha
Helix 133	133	N	63	77	Right-handed alpha
Helix 134	134	N	91	98	Right-handed alpha
Helix 135	135	N	99	100	Right-handed 310
Helix 136	136	N	101	103	Right-handed 310
Helix 137	137	N	129	152	Right-handed alpha
Helix 138	138	N	154	162	Right-handed alpha
Helix 139	139	N	170	176	Right-handed alpha
Helix 140	140	N	185	190	Right-handed alpha

There are 28 sheets in PDB entry 4JCR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	53	59	parallel
Strand 3	A	81	90	parallel
Strand 4	A	105	115	parallel
Strand 5	A	166	168	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	53	59	parallel
Strand 3	A	81	90	parallel
Strand 4	A	105	115	parallel
Strand 5	A	181	182	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	53	59	parallel
Strand 3	B	81	90	parallel
Strand 4	B	105	115	parallel
Strand 5	B	166	169	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	53	59	parallel
Strand 3	B	81	90	parallel
Strand 4	B	105	115	parallel
Strand 5	B	181	182	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	53	59	parallel
Strand 3	C	81	90	parallel
Strand 4	C	105	115	parallel
Strand 5	C	166	168	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	53	59	parallel
Strand 3	C	81	90	parallel
Strand 4	C	105	115	parallel
Strand 5	C	181	182	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	27	first strand
Strand 2	D	53	59	parallel
Strand 3	D	81	90	parallel
Strand 4	D	105	115	parallel
Strand 5	D	166	168	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	27	first strand
Strand 2	D	53	59	parallel
Strand 3	D	81	90	parallel
Strand 4	D	105	115	parallel
Strand 5	D	181	182	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	27	first strand
Strand 2	E	53	59	parallel
Strand 3	E	81	90	parallel
Strand 4	E	105	115	parallel
Strand 5	E	166	169	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	27	first strand
Strand 2	E	53	59	parallel
Strand 3	E	81	90	parallel
Strand 4	E	105	115	parallel
Strand 5	E	181	182	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	27	first strand
Strand 2	F	53	59	parallel
Strand 3	F	81	90	parallel
Strand 4	F	105	115	parallel
Strand 5	F	166	169	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	27	first strand
Strand 2	F	53	59	parallel
Strand 3	F	81	90	parallel
Strand 4	F	105	115	parallel
Strand 5	F	181	182	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	27	first strand
Strand 2	G	53	59	parallel
Strand 3	G	81	90	parallel
Strand 4	G	105	115	parallel
Strand 5	G	166	169	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	27	first strand
Strand 2	G	53	59	parallel
Strand 3	G	81	90	parallel
Strand 4	G	105	115	parallel
Strand 5	G	181	182	parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	27	first strand
Strand 2	H	53	59	parallel
Strand 3	H	81	90	parallel
Strand 4	H	105	115	parallel
Strand 5	H	166	169	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	27	first strand
Strand 2	H	53	59	parallel
Strand 3	H	81	90	parallel
Strand 4	H	105	115	parallel
Strand 5	H	181	182	parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	23	27	first strand
Strand 2	I	53	59	parallel
Strand 3	I	81	90	parallel
Strand 4	I	105	115	parallel
Strand 5	I	166	168	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	23	27	first strand
Strand 2	I	53	59	parallel
Strand 3	I	81	90	parallel
Strand 4	I	105	115	parallel
Strand 5	I	181	182	parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	23	27	first strand
Strand 2	J	53	59	parallel
Strand 3	J	81	90	parallel
Strand 4	J	105	115	parallel
Strand 5	J	166	169	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	23	27	first strand
Strand 2	J	53	59	parallel
Strand 3	J	81	90	parallel
Strand 4	J	105	115	parallel
Strand 5	J	181	182	parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	23	27	first strand
Strand 2	K	53	59	parallel
Strand 3	K	81	90	parallel
Strand 4	K	105	115	parallel
Strand 5	K	166	168	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	23	27	first strand
Strand 2	K	53	59	parallel
Strand 3	K	81	90	parallel
Strand 4	K	105	115	parallel
Strand 5	K	181	182	parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	23	27	first strand
Strand 2	L	53	59	parallel
Strand 3	L	81	90	parallel
Strand 4	L	105	115	parallel
Strand 5	L	166	169	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	23	27	first strand
Strand 2	L	53	59	parallel
Strand 3	L	81	90	parallel
Strand 4	L	105	115	parallel
Strand 5	L	181	182	parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	23	27	first strand
Strand 2	M	53	59	parallel
Strand 3	M	81	90	parallel
Strand 4	M	105	115	parallel
Strand 5	M	166	168	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	23	27	first strand
Strand 2	M	53	59	parallel
Strand 3	M	81	90	parallel
Strand 4	M	105	115	parallel
Strand 5	M	181	182	parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	23	27	first strand
Strand 2	N	53	59	parallel
Strand 3	N	81	90	parallel
Strand 4	N	105	115	parallel
Strand 5	N	166	169	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	23	27	first strand
Strand 2	N	53	59	parallel
Strand 3	N	81	90	parallel
Strand 4	N	105	115	parallel
Strand 5	N	181	182	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JCR

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JCR