Analysis of interatomic Contacts of Structural Units in PDB entry:
4JCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JCV entry

There are 6 chains in PDB entry 4JCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2SER 197
B
 LYS 2SER 197
C
 SER 9PRO 199
D
 PRO 4PRO 199
E
 SER 3VAL 226
F
 THR 5GLY 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 4JCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 17Right-handed alpha
Helix 2
2
A
21 35Right-handed alpha
Helix 3
3
A
36 54Right-handed alpha
Helix 4
4
A
69 74Right-handed alpha
Helix 5
5
A
87 97Right-handed alpha
Helix 6
6
A
123 128Right-handed alpha
Helix 7
7
A
129 131Right-handed 310
Helix 8
8
A
144 159Right-handed alpha
Helix 9
9
A
177 181Right-handed 310
Helix 10
10
A
182 192Right-handed alpha
Helix 11
11
B
4 17Right-handed alpha
Helix 12
12
B
21 35Right-handed alpha
Helix 13
13
B
36 54Right-handed alpha
Helix 14
14
B
69 74Right-handed alpha
Helix 15
15
B
87 97Right-handed alpha
Helix 16
16
B
123 128Right-handed alpha
Helix 17
17
B
129 131Right-handed 310
Helix 18
18
B
144 159Right-handed alpha
Helix 19
19
B
177 181Right-handed 310
Helix 20
20
B
182 192Right-handed alpha
Helix 21
21
C
10 17Right-handed alpha
Helix 22
22
C
21 34Right-handed alpha
Helix 23
23
C
36 54Right-handed alpha
Helix 24
24
C
87 97Right-handed alpha
Helix 25
25
C
124 131Right-handed 310
Helix 26
26
C
144 159Right-handed alpha
Helix 27
27
C
177 181Right-handed 310
Helix 28
28
C
182 192Right-handed alpha
Helix 29
29
D
5 17Right-handed alpha
Helix 30
30
D
21 34Right-handed alpha
Helix 31
31
D
36 54Right-handed alpha
Helix 32
32
D
87 97Right-handed alpha
Helix 33
33
D
124 131Right-handed 310
Helix 34
34
D
144 159Right-handed alpha
Helix 35
35
D
177 181Right-handed 310
Helix 36
36
D
182 192Right-handed alpha
Helix 37
37
E
80 84Right-handed 310
Helix 38
38
E
85 102Right-handed alpha
Helix 39
39
E
110 125Right-handed alpha
Helix 40
40
E
128 144Right-handed alpha
Helix 41
41
E
173 177Right-handed 310
Helix 42
42
E
183 192Right-handed alpha
Helix 43
43
E
197 203Right-handed alpha
Helix 44
44
E
207 209Right-handed 310
Helix 45
45
E
210 226Right-handed alpha
Helix 46
46
F
80 84Right-handed 310
Helix 47
47
F
85 102Right-handed alpha
Helix 48
48
F
109 125Right-handed alpha
Helix 49
49
F
128 144Right-handed alpha
Helix 50
50
F
173 177Right-handed 310
Helix 51
51
F
183 193Right-handed alpha
Helix 52
52
F
197 203Right-handed alpha
Helix 53
53
F
207 209Right-handed 310
Helix 54
54
F
210 226Right-handed alpha
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There are 10 sheets in PDB entry 4JCV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
63 64anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
81 85parallel
Strand 3
A
136 139parallel
Strand 4
A
164 167parallel
Strand 5
D
194 195anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 197first strand
Strand 2
D
164 167anti-parallel
Strand 3
D
136 140parallel
Strand 4
D
81 85parallel
Strand 5
D
103 106parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
63 64anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 106first strand
Strand 2
B
81 85parallel
Strand 3
B
136 139parallel
Strand 4
B
164 167parallel
Strand 5
C
194 195anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 197first strand
Strand 2
C
164 167anti-parallel
Strand 3
C
136 140parallel
Strand 4
C
81 85parallel
Strand 5
C
103 106parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
32 39first strand
Strand 2
E
22 29anti-parallel
Strand 3
E
5 18anti-parallel
Strand 4
E
55 61anti-parallel
Strand 5
E
70 78anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
163 164first strand
Strand 2
E
171 172anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
32 39first strand
Strand 2
F
22 29anti-parallel
Strand 3
F
6 18anti-parallel
Strand 4
F
55 61anti-parallel
Strand 5
F
70 78anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
163 164first strand
Strand 2
F
171 172anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il