Analysis of interatomic Contacts of Structural Units in PDB entry:
4JD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JD0 entry

There is 1 chain in PDB entry 4JD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -3CYS 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4JD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 20Right-handed alpha
Helix 3
3
A
23 26Right-handed 310
Helix 4
4
A
35 44Right-handed alpha
Helix 5
5
A
58 70Right-handed alpha
Helix 6
6
A
80 83Right-handed 310
Helix 7
7
A
84 92Right-handed alpha
Helix 8
8
A
93 96Right-handed 310
Helix 9
9
A
111 119Right-handed 310
Helix 10
10
A
175 183Right-handed 310
Helix 11
11
A
190 201Right-handed alpha
Helix 12
12
A
220 224Right-handed 310
Helix 13
13
A
225 236Right-handed alpha
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There are 3 sheets in PDB entry 4JD0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 78first strand
Strand 2
A
49 55parallel
Strand 3
A
3 8parallel
Strand 4
A
100 105parallel
Strand 5
A
164 173anti-parallel
Strand 6
A
144 148anti-parallel
Strand 7
A
151 156anti-parallel
Strand 8
A
205 209anti-parallel
Strand 9
A
126 131parallel
Strand 10
A
164 173anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
32 33anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
216 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il