Analysis of interatomic Contacts of Structural Units in PDB entry:
4JD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JD6 entry

There are 6 chains in PDB entry 4JD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3PHE 402
B
 VAL 3PHE 402
C
 VAL 3PHE 402
D
 VAL 3PHE 402
E
 VAL 3PHE 402
F
 VAL 3PHE 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 4JD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
28 38Right-handed alpha
Helix 3
3
A
95 111Right-handed alpha
Helix 4
4
A
167 170Right-handed 310
Helix 5
5
A
171 186Right-handed alpha
Helix 6
6
A
193 203Right-handed alpha
Helix 7
7
A
245 257Right-handed alpha
Helix 8
8
A
274 279Right-handed alpha
Helix 9
9
A
281 283Right-handed 310
Helix 10
10
A
300 308Right-handed alpha
Helix 11
11
A
352 361Right-handed alpha
Helix 12
12
A
365 372Right-handed alpha
Helix 13
13
A
379 391Right-handed alpha
Helix 14
14
B
12 24Right-handed alpha
Helix 15
15
B
28 38Right-handed alpha
Helix 16
16
B
95 112Right-handed alpha
Helix 17
17
B
167 170Right-handed 310
Helix 18
18
B
171 186Right-handed alpha
Helix 19
19
B
193 203Right-handed alpha
Helix 20
20
B
245 257Right-handed alpha
Helix 21
21
B
274 279Right-handed alpha
Helix 22
22
B
281 283Right-handed 310
Helix 23
23
B
300 308Right-handed alpha
Helix 24
24
B
352 361Right-handed alpha
Helix 25
25
B
365 372Right-handed alpha
Helix 26
26
B
379 391Right-handed alpha
Helix 27
27
C
12 24Right-handed alpha
Helix 28
28
C
29 37Right-handed alpha
Helix 29
29
C
38 40Right-handed 310
Helix 30
30
C
95 112Right-handed alpha
Helix 31
31
C
167 170Right-handed 310
Helix 32
32
C
171 186Right-handed alpha
Helix 33
33
C
193 203Right-handed alpha
Helix 34
34
C
245 257Right-handed alpha
Helix 35
35
C
274 279Right-handed alpha
Helix 36
36
C
281 283Right-handed 310
Helix 37
37
C
300 308Right-handed alpha
Helix 38
38
C
352 361Right-handed alpha
Helix 39
39
C
365 372Right-handed alpha
Helix 40
40
C
380 390Right-handed alpha
Helix 41
41
D
12 24Right-handed alpha
Helix 42
42
D
28 38Right-handed alpha
Helix 43
43
D
95 112Right-handed alpha
Helix 44
44
D
167 170Right-handed 310
Helix 45
45
D
171 186Right-handed alpha
Helix 46
46
D
193 203Right-handed alpha
Helix 47
47
D
245 257Right-handed alpha
Helix 48
48
D
274 279Right-handed alpha
Helix 49
49
D
281 283Right-handed 310
Helix 50
50
D
300 308Right-handed alpha
Helix 51
51
D
352 361Right-handed alpha
Helix 52
52
D
365 372Right-handed alpha
Helix 53
53
D
379 391Right-handed alpha
Helix 54
54
E
9 11Right-handed 310
Helix 55
55
E
12 24Right-handed alpha
Helix 56
56
E
28 37Right-handed alpha
Helix 57
57
E
38 40Right-handed 310
Helix 58
58
E
95 111Right-handed alpha
Helix 59
59
E
167 170Right-handed 310
Helix 60
60
E
171 186Right-handed alpha
Helix 61
61
E
193 203Right-handed alpha
Helix 62
62
E
245 257Right-handed alpha
Helix 63
63
E
275 279Right-handed 310
Helix 64
64
E
300 307Right-handed alpha
Helix 65
65
E
352 361Right-handed alpha
Helix 66
66
E
365 372Right-handed alpha
Helix 67
67
E
379 391Right-handed alpha
Helix 68
68
F
12 24Right-handed alpha
Helix 69
69
F
28 37Right-handed alpha
Helix 70
70
F
38 40Right-handed 310
Helix 71
71
F
95 112Right-handed alpha
Helix 72
72
F
167 170Right-handed 310
Helix 73
73
F
171 186Right-handed alpha
Helix 74
74
F
193 203Right-handed alpha
Helix 75
75
F
245 257Right-handed alpha
Helix 76
76
F
274 279Right-handed alpha
Helix 77
77
F
281 283Right-handed 310
Helix 78
78
F
300 308Right-handed alpha
Helix 79
79
F
352 361Right-handed alpha
Helix 80
80
F
365 372Right-handed alpha
Helix 81
81
F
379 390Right-handed alpha
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There are 18 sheets in PDB entry 4JD6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
57 71anti-parallel
Strand 4
A
75 87anti-parallel
Strand 5
A
115 119parallel
Strand 6
A
294 298anti-parallel
Strand 7
A
132 133anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
215 219anti-parallel
Strand 3
A
222 228anti-parallel
Strand 4
A
235 243anti-parallel
Strand 5
A
264 269parallel
Strand 6
A
136 143anti-parallel
Strand 7
A
285 292anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 342first strand
Strand 2
A
327 334anti-parallel
Strand 3
A
317 323anti-parallel
Strand 4
A
349 351parallel
Strand 5
A
375 377anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
45 50anti-parallel
Strand 3
B
57 71anti-parallel
Strand 4
B
75 87anti-parallel
Strand 5
B
115 119parallel
Strand 6
B
294 298anti-parallel
Strand 7
B
132 133anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 166first strand
Strand 2
B
215 219anti-parallel
Strand 3
B
222 228anti-parallel
Strand 4
B
235 243anti-parallel
Strand 5
B
264 269parallel
Strand 6
B
136 143anti-parallel
Strand 7
B
285 292anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 342first strand
Strand 2
B
327 334anti-parallel
Strand 3
B
317 323anti-parallel
Strand 4
B
349 351parallel
Strand 5
B
375 376anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
45 49anti-parallel
Strand 3
C
58 71anti-parallel
Strand 4
C
75 87anti-parallel
Strand 5
C
115 118parallel
Strand 6
C
295 298anti-parallel
Strand 7
C
132 133anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 166first strand
Strand 2
C
215 219anti-parallel
Strand 3
C
222 228anti-parallel
Strand 4
C
235 243anti-parallel
Strand 5
C
264 269parallel
Strand 6
C
136 143anti-parallel
Strand 7
C
285 292anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
337 342first strand
Strand 2
C
327 334anti-parallel
Strand 3
C
317 323anti-parallel
Strand 4
C
349 351parallel
Strand 5
C
375 377anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 6first strand
Strand 2
D
45 49anti-parallel
Strand 3
D
58 71anti-parallel
Strand 4
D
75 87anti-parallel
Strand 5
D
115 119parallel
Strand 6
D
294 298anti-parallel
Strand 7
D
132 133anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
164 166first strand
Strand 2
D
215 219anti-parallel
Strand 3
D
222 228anti-parallel
Strand 4
D
235 243anti-parallel
Strand 5
D
264 269parallel
Strand 6
D
136 143anti-parallel
Strand 7
D
285 292anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
337 342first strand
Strand 2
D
327 334anti-parallel
Strand 3
D
317 323anti-parallel
Strand 4
D
349 351parallel
Strand 5
D
375 377anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 6first strand
Strand 2
E
45 50anti-parallel
Strand 3
E
57 70anti-parallel
Strand 4
E
76 87anti-parallel
Strand 5
E
115 118parallel
Strand 6
E
295 298anti-parallel
Strand 7
E
132 133anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
164 166first strand
Strand 2
E
215 219anti-parallel
Strand 3
E
222 228anti-parallel
Strand 4
E
235 243anti-parallel
Strand 5
E
264 269parallel
Strand 6
E
136 143anti-parallel
Strand 7
E
285 292anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
337 343first strand
Strand 2
E
327 334anti-parallel
Strand 3
E
317 323anti-parallel
Strand 4
E
349 351parallel
Strand 5
E
375 377anti-parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 6first strand
Strand 2
F
45 50anti-parallel
Strand 3
F
57 71anti-parallel
Strand 4
F
75 87anti-parallel
Strand 5
F
115 118parallel
Strand 6
F
295 298anti-parallel
Strand 7
F
132 133anti-parallel
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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
164 166first strand
Strand 2
F
215 219anti-parallel
Strand 3
F
222 228anti-parallel
Strand 4
F
235 243anti-parallel
Strand 5
F
264 269parallel
Strand 6
F
136 143anti-parallel
Strand 7
F
285 292anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
337 343first strand
Strand 2
F
327 334anti-parallel
Strand 3
F
317 323anti-parallel
Strand 4
F
349 351parallel
Strand 5
F
375 376anti-parallel
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