Analysis of interatomic Contacts of Structural Units in PDB entry:
4JD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JD7 entry

There are 2 chains in PDB entry 4JD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -5ILE 308
D
 TYR -3ILE 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4JD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 42Right-handed alpha
Helix 2
2
A
43 51Right-handed alpha
Helix 3
3
A
88 102Right-handed alpha
Helix 4
4
A
175 177Right-handed 310
Helix 5
5
A
178 196Right-handed alpha
Helix 6
6
A
200 204Right-handed 310
Helix 7
7
A
236 250Right-handed alpha
Helix 8
8
D
-3 1Right-handed 310
Helix 9
9
D
30 42Right-handed alpha
Helix 10
10
D
42 51Right-handed alpha
Helix 11
11
D
88 102Right-handed alpha
Helix 12
12
D
175 177Right-handed 310
Helix 13
13
D
178 196Right-handed alpha
Helix 14
14
D
200 204Right-handed 310
Helix 15
15
D
227 229Right-handed 310
Helix 16
16
D
236 250Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4JD7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 147first strand
Strand 2
A
151 159anti-parallel
Strand 3
A
163 168anti-parallel
Strand 4
A
208 215parallel
Strand 5
A
218 226anti-parallel
Strand 6
A
230 231anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 147first strand
Strand 2
A
151 159anti-parallel
Strand 3
A
163 168anti-parallel
Strand 4
A
208 215parallel
Strand 5
A
218 226anti-parallel
Strand 6
A
259 262parallel
Strand 7
A
268 276anti-parallel
Strand 8
A
279 286anti-parallel
Strand 9
A
129 132anti-parallel
Strand 10
A
117 123anti-parallel
Strand 11
A
108 114anti-parallel
Strand 12
A
74 79parallel
Strand 13
A
60 65anti-parallel
Strand 14
A
14 21parallel
Strand 15
A
2 11anti-parallel
Strand 16
A
288 298anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
137 147first strand
Strand 2
D
151 159anti-parallel
Strand 3
D
163 168anti-parallel
Strand 4
D
208 215parallel
Strand 5
D
218 226anti-parallel
Strand 6
D
230 231anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
137 147first strand
Strand 2
D
151 159anti-parallel
Strand 3
D
163 168anti-parallel
Strand 4
D
208 215parallel
Strand 5
D
218 226anti-parallel
Strand 6
D
259 262parallel
Strand 7
D
268 276anti-parallel
Strand 8
D
279 286anti-parallel
Strand 9
D
129 132anti-parallel
Strand 10
D
117 123anti-parallel
Strand 11
D
108 114anti-parallel
Strand 12
D
72 79parallel
Strand 13
D
60 65anti-parallel
Strand 14
D
14 21parallel
Strand 15
D
2 11anti-parallel
Strand 16
D
288 298anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il