Analysis of interatomic Contacts of Structural Units in PDB entry:
4JDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JDA entry

There are 4 chains in PDB entry 4JDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 23SER 207
B
 TYR 23ALA 206
C
 TYR 23SER 207
D
 TYR 23SER 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4JDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 41Right-handed alpha
Helix 2
2
A
61 70Right-handed alpha
Helix 3
3
A
74 78Right-handed 310
Helix 4
4
A
181 204Right-handed alpha
Helix 5
5
B
26 41Right-handed alpha
Helix 6
6
B
61 70Right-handed alpha
Helix 7
7
B
74 78Right-handed 310
Helix 8
8
B
181 206Right-handed alpha
Helix 9
9
C
26 41Right-handed alpha
Helix 10
10
C
61 70Right-handed alpha
Helix 11
11
C
74 78Right-handed 310
Helix 12
12
C
181 206Right-handed alpha
Helix 13
13
D
26 32Right-handed alpha
Helix 14
14
D
33 41Right-handed alpha
Helix 15
15
D
61 70Right-handed alpha
Helix 16
16
D
74 78Right-handed 310
Helix 17
17
D
181 204Right-handed alpha
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There are 5 sheets in PDB entry 4JDA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 58first strand
Strand 2
A
163 175anti-parallel
Strand 3
A
145 155anti-parallel
Strand 4
A
129 136anti-parallel
Strand 5
A
115 124anti-parallel
Strand 6
A
102 107anti-parallel
Strand 7
A
82 89anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 58first strand
Strand 2
B
165 175anti-parallel
Strand 3
B
145 153anti-parallel
Strand 4
B
129 136anti-parallel
Strand 5
B
115 124anti-parallel
Strand 6
B
102 107anti-parallel
Strand 7
B
82 89anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 58first strand
Strand 2
C
165 175anti-parallel
Strand 3
C
145 153anti-parallel
Strand 4
C
129 136anti-parallel
Strand 5
C
115 124anti-parallel
Strand 6
C
102 107anti-parallel
Strand 7
C
82 84anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 58first strand
Strand 2
C
165 175anti-parallel
Strand 3
C
145 153anti-parallel
Strand 4
C
129 136anti-parallel
Strand 5
C
115 124anti-parallel
Strand 6
C
102 107anti-parallel
Strand 7
C
87 89anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 58first strand
Strand 2
D
165 175anti-parallel
Strand 3
D
145 153anti-parallel
Strand 4
D
129 136anti-parallel
Strand 5
D
115 124anti-parallel
Strand 6
D
102 107anti-parallel
Strand 7
D
82 87anti-parallel
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