Analysis of interatomic Contacts of Structural Units in PDB entry:
4JDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JDG entry

There is 1 chain in PDB entry 4JDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 26GLY 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 4JDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 41Right-handed alpha
Helix 2
2
A
43 54Right-handed alpha
Helix 3
3
A
55 59Right-handed 310
Helix 4
4
A
61 65Right-handed 310
Helix 5
5
A
67 72Right-handed alpha
Helix 6
6
A
73 75Right-handed 310
Helix 7
7
A
78 86Right-handed 310
Helix 8
8
A
97 102Right-handed alpha
Helix 9
9
A
112 125Right-handed alpha
Helix 10
10
A
137 154Right-handed alpha
Helix 11
11
A
155 159Right-handed 310
Helix 12
12
A
163 167Right-handed 310
Helix 13
13
A
180 186Right-handed alpha
Helix 14
14
A
186 198Right-handed alpha
Helix 15
15
A
200 214Right-handed alpha
Helix 16
16
A
217 219Right-handed 310
Helix 17
17
A
220 225Right-handed alpha
Helix 18
18
A
229 248Right-handed alpha
Helix 19
19
A
260 291Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 4JDG.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
170 173anti-parallel
Strand 3
A
258 259parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il