Analysis of interatomic Contacts of Structural Units in PDB entry:
4JDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JDL entry

There are 3 chains in PDB entry 4JDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 37GLN 203
B
 THR 36ARG 202
C
 ARG 37ARG 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4JDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 46Right-handed alpha
Helix 2
2
A
69 79Right-handed alpha
Helix 3
3
A
180 200Right-handed alpha
Helix 4
4
B
45 50Right-handed alpha
Helix 5
5
B
69 78Right-handed alpha
Helix 6
6
B
82 86Right-handed 310
Helix 7
7
B
180 185Right-handed alpha
Helix 8
8
B
186 197Right-handed alpha
Helix 9
9
C
44 50Right-handed alpha
Helix 10
10
C
69 77Right-handed alpha
Helix 11
11
C
177 182Right-handed alpha
Helix 12
12
C
185 199Right-handed alpha
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There are 6 sheets in PDB entry 4JDL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
151 153anti-parallel
Strand 4
A
133 135anti-parallel
Strand 5
A
126 128anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
109 110anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 126first strand
Strand 2
B
135 138anti-parallel
Strand 3
B
149 151anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 58first strand
Strand 2
C
170 171anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 128first strand
Strand 2
C
133 135anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 152first strand
Strand 2
C
166 167anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il