Analysis of interatomic Contacts of Structural Units in PDB entry:
4JDN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JDN entry

There are 3 chains in PDB entry 4JDN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 118GLN 261
B
 ALA 119GLN 261
C
 LYS 118ALA 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 4JDN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
243 247Right-handed 310
Helix 2
2
B
243 247Right-handed 310
Helix 3
3
C
243 247Right-handed 310
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There are 9 sheets in PDB entry 4JDN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 125first strand
Strand 2
A
251 258anti-parallel
Strand 3
A
162 172anti-parallel
Strand 4
A
233 235anti-parallel
Strand 5
A
129 131anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 125first strand
Strand 2
A
251 258anti-parallel
Strand 3
A
162 172anti-parallel
Strand 4
A
203 212anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 154first strand
Strand 2
A
219 227anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
192 198anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
251 258anti-parallel
Strand 3
B
162 172anti-parallel
Strand 4
B
233 235anti-parallel
Strand 5
B
129 131anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
251 258anti-parallel
Strand 3
B
162 172anti-parallel
Strand 4
B
203 212anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 154first strand
Strand 2
B
219 227anti-parallel
Strand 3
B
176 184anti-parallel
Strand 4
B
192 198anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 125first strand
Strand 2
C
251 258anti-parallel
Strand 3
C
162 172anti-parallel
Strand 4
C
233 235anti-parallel
Strand 5
C
129 131anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 125first strand
Strand 2
C
251 258anti-parallel
Strand 3
C
162 172anti-parallel
Strand 4
C
203 212anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 154first strand
Strand 2
C
219 227anti-parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
192 198anti-parallel
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