Analysis of interatomic Contacts of Structural Units in PDB entry:
4JDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JDP entry

There are 2 chains in PDB entry 4JDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 264
B
 GLN -1LEU 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4JDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 36Right-handed alpha
Helix 2
2
A
50 61Right-handed alpha
Helix 3
3
A
66 68Right-handed 310
Helix 4
4
A
73 85Right-handed alpha
Helix 5
5
A
95 105Right-handed alpha
Helix 6
6
A
127 141Right-handed alpha
Helix 7
7
A
163 175Right-handed alpha
Helix 8
8
A
186 198Right-handed alpha
Helix 9
9
A
200 202Right-handed 310
Helix 10
10
A
213 221Right-handed alpha
Helix 11
11
A
237 246Right-handed alpha
Helix 12
12
A
255 262Right-handed alpha
Helix 13
13
B
23 36Right-handed alpha
Helix 14
14
B
50 61Right-handed alpha
Helix 15
15
B
66 68Right-handed 310
Helix 16
16
B
73 85Right-handed alpha
Helix 17
17
B
95 105Right-handed alpha
Helix 18
18
B
127 140Right-handed alpha
Helix 19
19
B
163 175Right-handed alpha
Helix 20
20
B
186 198Right-handed alpha
Helix 21
21
B
200 202Right-handed 310
Helix 22
22
B
213 221Right-handed alpha
Helix 23
23
B
237 246Right-handed alpha
Helix 24
24
B
255 262Right-handed alpha
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There are 8 sheets in PDB entry 4JDP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
39 44parallel
Strand 3
A
7 10parallel
Strand 4
A
204 208parallel
Strand 5
A
224 228parallel
Strand 6
A
251 253parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
21 22anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
89 92parallel
Strand 3
A
117 120parallel
Strand 4
A
143 146parallel
Strand 5
A
180 181parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
158 161anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
39 44parallel
Strand 3
B
7 10parallel
Strand 4
B
204 208parallel
Strand 5
B
224 228parallel
Strand 6
B
251 253parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
21 22anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
89 92parallel
Strand 3
B
117 120parallel
Strand 4
B
143 146parallel
Strand 5
B
180 181parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
160 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il