Analysis of interatomic Contacts of Structural Units in PDB entry:
4JDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JDR entry

There are 2 chains in PDB entry 4JDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 472
B
 SER 2LYS 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4JDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
42 48Right-handed alpha
Helix 3
3
A
49 69Right-handed alpha
Helix 4
4
A
70 72Right-handed 310
Helix 5
5
A
82 108Right-handed alpha
Helix 6
6
A
164 170Right-handed alpha
Helix 7
7
A
184 197Right-handed alpha
Helix 8
8
A
215 227Right-handed alpha
Helix 9
9
A
277 280Right-handed 310
Helix 10
10
A
281 286Right-handed 310
Helix 11
11
A
312 316Right-handed 310
Helix 12
12
A
320 336Right-handed alpha
Helix 13
13
A
363 370Right-handed alpha
Helix 14
14
A
384 390Right-handed alpha
Helix 15
15
A
417 420Right-handed 310
Helix 16
16
A
421 431Right-handed alpha
Helix 17
17
A
434 441Right-handed alpha
Helix 18
18
A
449 460Right-handed alpha
Helix 19
19
B
15 28Right-handed alpha
Helix 20
20
B
42 48Right-handed alpha
Helix 21
21
B
49 70Right-handed alpha
Helix 22
22
B
82 108Right-handed alpha
Helix 23
23
B
164 170Right-handed alpha
Helix 24
24
B
184 197Right-handed alpha
Helix 25
25
B
215 227Right-handed alpha
Helix 26
26
B
277 280Right-handed 310
Helix 27
27
B
281 286Right-handed 310
Helix 28
28
B
312 316Right-handed 310
Helix 29
29
B
320 336Right-handed alpha
Helix 30
30
B
363 370Right-handed alpha
Helix 31
31
B
384 390Right-handed alpha
Helix 32
32
B
417 420Right-handed 310
Helix 33
33
B
421 431Right-handed alpha
Helix 34
34
B
434 440Right-handed alpha
Helix 35
35
B
449 460Right-handed alpha
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There are 14 sheets in PDB entry 4JDR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
32 36parallel
Strand 3
A
3 12parallel
Strand 4
A
134 143parallel
Strand 5
A
124 128anti-parallel
Strand 6
A
116 121anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
32 36parallel
Strand 3
A
3 12parallel
Strand 4
A
134 143parallel
Strand 5
A
308 310parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
B
80 81anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
B
74 75anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
273 275anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
266 269parallel
Strand 3
A
177 181parallel
Strand 4
A
200 205parallel
Strand 5
A
231 234parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 244first strand
Strand 2
A
247 254anti-parallel
Strand 3
A
262 264anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 351first strand
Strand 2
A
356 361anti-parallel
Strand 3
A
408 415anti-parallel
Strand 4
A
396 402anti-parallel
Strand 5
A
374 380anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
32 36parallel
Strand 3
B
3 12parallel
Strand 4
B
134 143parallel
Strand 5
B
124 128anti-parallel
Strand 6
B
116 121anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
32 36parallel
Strand 3
B
3 12parallel
Strand 4
B
134 143parallel
Strand 5
B
308 310parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 149first strand
Strand 2
B
273 275anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
266 269parallel
Strand 3
B
177 181parallel
Strand 4
B
200 205parallel
Strand 5
B
231 234parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 244first strand
Strand 2
B
247 254anti-parallel
Strand 3
B
262 264anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 351first strand
Strand 2
B
356 361anti-parallel
Strand 3
B
408 415anti-parallel
Strand 4
B
396 402anti-parallel
Strand 5
B
374 380anti-parallel
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