Analysis of interatomic Contacts of Structural Units in PDB entry:
4JDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JDU entry

There are 2 chains in PDB entry 4JDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 89ALA 115
A
 ARG 117MSE 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4JDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
99 104Right-handed 310
Helix 2
2
A
110 125Right-handed alpha
Helix 3
3
A
149 159Right-handed alpha
Helix 4
4
A
160 165Right-handed 310
Helix 5
5
A
171 181Right-handed alpha
Helix 6
6
A
205 216Right-handed alpha
Helix 7
7
A
255 266Right-handed alpha
Helix 8
8
A
275 288Right-handed alpha
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There are 2 sheets in PDB entry 4JDU. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 147first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
90 97parallel
Strand 4
A
190 197parallel
Strand 5
A
219 224parallel
Strand 6
A
270 272parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
251 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il