Analysis of interatomic Contacts of Structural Units in PDB entry:
4JDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JDV entry

There are 4 chains in PDB entry 4JDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2HIS 224
B
 ILE 2GLU 209
H
 VAL 2PRO 217
L
 GLU 1GLU 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4JDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 32Right-handed 310
Helix 2
2
A
61 64Right-handed 310
Helix 3
3
A
73 75Right-handed 310
Helix 4
4
A
83 87Right-handed 310
Helix 5
5
A
98 99Right-handed 310
Helix 6
6
A
160 162Right-handed 310
Helix 7
7
A
191 195Right-handed 310
Helix 8
8
A
205 208Right-handed 310
Helix 9
9
A
218 222Right-handed 310
Helix 10
10
B
79 83Right-handed 310
Helix 11
11
B
117 122Right-handed alpha
Helix 12
12
B
179 185Right-handed alpha
Helix 13
13
H
28 32Right-handed 310
Helix 14
14
H
61 64Right-handed 310
Helix 15
15
H
73 75Right-handed 310
Helix 16
16
H
83 87Right-handed 310
Helix 17
17
H
98 99Right-handed 310
Helix 18
18
H
160 162Right-handed 310
Helix 19
19
H
189 193Right-handed 310
Helix 20
20
H
205 208Right-handed 310
Helix 21
21
L
79 83Right-handed 310
Helix 22
22
L
117 122Right-handed alpha
Helix 23
23
L
179 183Right-handed alpha
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There are 22 sheets in PDB entry 4JDV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
67 72anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
111 115parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
57 59anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
111 115parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
104 107anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
139 149anti-parallel
Strand 3
A
180 189anti-parallel
Strand 4
A
167 169anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
139 149anti-parallel
Strand 3
A
180 189anti-parallel
Strand 4
A
173 174anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
199 204anti-parallel
Strand 3
A
209 214anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
62 67anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
98 102parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
34 38anti-parallel
Strand 5
B
45 49anti-parallel
Strand 6
B
53 54anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
98 102parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
93 94anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 114first strand
Strand 2
B
125 135anti-parallel
Strand 3
B
169 178anti-parallel
Strand 4
B
155 159anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
141 146anti-parallel
Strand 3
B
187 193anti-parallel
Strand 4
B
201 206anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
111 115parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
111 115parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
104 107anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
124 131first strand
Strand 2
H
140 149anti-parallel
Strand 3
H
180 188anti-parallel
Strand 4
H
167 169anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
124 131first strand
Strand 2
H
140 149anti-parallel
Strand 3
H
180 188anti-parallel
Strand 4
H
173 174anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
155 158first strand
Strand 2
H
199 204anti-parallel
Strand 3
H
209 214anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
3 7first strand
Strand 2
L
19 26anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
98 102parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
34 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
98 102parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
93 94anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
110 114first strand
Strand 2
L
125 135anti-parallel
Strand 3
L
169 178anti-parallel
Strand 4
L
155 159anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
149 150first strand
Strand 2
L
141 146anti-parallel
Strand 3
L
187 193anti-parallel
Strand 4
L
201 206anti-parallel
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