Analysis of interatomic Contacts of Structural Units in PDB entry:
4JDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JDY entry

There are 3 chains in PDB entry 4JDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11ARG 274
B
 THR 11ARG 274
C
 THR 11ARG 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 4JDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
32 42Right-handed alpha
Helix 3
3
A
53 61Right-handed alpha
Helix 4
4
A
68 79Right-handed alpha
Helix 5
5
A
91 102Right-handed alpha
Helix 6
6
A
122 126Right-handed 310
Helix 7
7
A
136 146Right-handed alpha
Helix 8
8
A
162 182Right-handed alpha
Helix 9
9
A
183 185Right-handed 310
Helix 10
10
A
186 194Right-handed alpha
Helix 11
11
A
197 208Right-handed alpha
Helix 12
12
A
222 232Right-handed alpha
Helix 13
13
A
240 244Right-handed 310
Helix 14
14
A
248 262Right-handed alpha
Helix 15
15
A
265 274Right-handed alpha
Helix 16
16
B
19 23Right-handed 310
Helix 17
17
B
32 42Right-handed alpha
Helix 18
18
B
53 61Right-handed alpha
Helix 19
19
B
68 79Right-handed alpha
Helix 20
20
B
91 101Right-handed alpha
Helix 21
21
B
122 126Right-handed 310
Helix 22
22
B
136 146Right-handed alpha
Helix 23
23
B
162 182Right-handed alpha
Helix 24
24
B
183 185Right-handed 310
Helix 25
25
B
186 195Right-handed alpha
Helix 26
26
B
197 208Right-handed alpha
Helix 27
27
B
222 232Right-handed alpha
Helix 28
28
B
241 246Right-handed alpha
Helix 29
29
B
248 262Right-handed alpha
Helix 30
30
B
265 274Right-handed alpha
Helix 31
31
C
19 23Right-handed 310
Helix 32
32
C
32 42Right-handed alpha
Helix 33
33
C
53 60Right-handed alpha
Helix 34
34
C
68 79Right-handed alpha
Helix 35
35
C
91 102Right-handed alpha
Helix 36
36
C
122 126Right-handed 310
Helix 37
37
C
136 146Right-handed alpha
Helix 38
38
C
162 182Right-handed alpha
Helix 39
39
C
183 185Right-handed 310
Helix 40
40
C
186 195Right-handed alpha
Helix 41
41
C
197 208Right-handed alpha
Helix 42
42
C
222 232Right-handed alpha
Helix 43
43
C
241 246Right-handed alpha
Helix 44
44
C
248 262Right-handed alpha
Helix 45
45
C
265 273Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4JDY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
150 153parallel
Strand 3
A
130 134parallel
Strand 4
A
105 108parallel
Strand 5
A
83 87parallel
Strand 6
A
46 49parallel
Strand 7
A
26 30parallel
Strand 8
A
237 239parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 215first strand
Strand 2
B
150 153parallel
Strand 3
B
130 134parallel
Strand 4
B
105 108parallel
Strand 5
B
83 87parallel
Strand 6
B
46 49parallel
Strand 7
B
26 30parallel
Strand 8
B
237 239parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
213 215first strand
Strand 2
C
150 153parallel
Strand 3
C
130 134parallel
Strand 4
C
105 109parallel
Strand 5
C
83 88parallel
Strand 6
C
46 49parallel
Strand 7
C
26 30parallel
Strand 8
C
237 239parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il