Analysis of interatomic Contacts of Structural Units in PDB entry:
4JDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JDZ entry

There are 2 chains in PDB entry 4JDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 235ALA 680
A
 ALA 236TYR 673
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4JDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
238 240Right-handed 310
Helix 2
2
B
298 305Right-handed 310
Helix 3
3
B
324 326Right-handed 310
Helix 4
4
B
335 340Right-handed alpha
Helix 5
5
B
355 358Right-handed 310
Helix 6
6
B
474 478Right-handed 310
Helix 7
7
B
482 486Right-handed 310
Helix 8
8
A
238 240Right-handed 310
Helix 9
9
A
298 305Right-handed 310
Helix 10
10
A
324 326Right-handed 310
Helix 11
11
A
335 340Right-handed alpha
Helix 12
12
A
355 358Right-handed 310
Helix 13
13
A
474 478Right-handed 310
Helix 14
14
A
482 486Right-handed 310
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There are 12 sheets in PDB entry 4JDZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 251first strand
Strand 2
B
265 274anti-parallel
Strand 3
B
344 353anti-parallel
Strand 4
B
292 293anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
316 323anti-parallel
Strand 3
B
328 333anti-parallel
Strand 4
B
283 288anti-parallel
Strand 5
B
362 371anti-parallel
Strand 6
B
374 382anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 390first strand
Strand 2
B
393 404anti-parallel
Strand 3
B
413 421anti-parallel
Strand 4
B
508 515anti-parallel
Strand 5
B
455 460anti-parallel
Strand 6
B
479 480anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 492first strand
Strand 2
B
496 504anti-parallel
Strand 3
B
428 436anti-parallel
Strand 4
B
525 534anti-parallel
Strand 5
B
537 547anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
610 616first strand
Strand 2
B
561 569anti-parallel
Strand 3
B
662 670parallel
Strand 4
B
633 634anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
599 604first strand
Strand 2
B
588 593anti-parallel
Strand 3
B
619 626anti-parallel
Strand 4
B
652 657anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 251first strand
Strand 2
A
265 274anti-parallel
Strand 3
A
344 353anti-parallel
Strand 4
A
292 293anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
316 323anti-parallel
Strand 3
A
328 333anti-parallel
Strand 4
A
283 288anti-parallel
Strand 5
A
362 371anti-parallel
Strand 6
A
374 382anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
393 404anti-parallel
Strand 3
A
413 421anti-parallel
Strand 4
A
508 515anti-parallel
Strand 5
A
455 460anti-parallel
Strand 6
A
479 480anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 492first strand
Strand 2
A
496 504anti-parallel
Strand 3
A
428 436anti-parallel
Strand 4
A
525 533anti-parallel
Strand 5
A
540 547anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 615first strand
Strand 2
A
560 568anti-parallel
Strand 3
A
666 669parallel
Strand 4
A
632 633anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 603first strand
Strand 2
A
587 591anti-parallel
Strand 3
A
619 625anti-parallel
Strand 4
A
651 655anti-parallel
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