Analysis of interatomic Contacts of Structural Units in PDB entry:
4JE0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JE0 entry

There are 2 chains in PDB entry 4JE0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1ALA 311
B
 GLY -1ALA 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4JE0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 5Right-handed 310
Helix 2
2
A
63 70Right-handed 310
Helix 3
3
A
89 91Right-handed 310
Helix 4
4
A
100 105Right-handed alpha
Helix 5
5
A
120 123Right-handed 310
Helix 6
6
A
239 243Right-handed 310
Helix 7
7
A
247 251Right-handed 310
Helix 8
8
B
3 5Right-handed 310
Helix 9
9
B
89 91Right-handed 310
Helix 10
10
B
100 105Right-handed alpha
Helix 11
11
B
120 123Right-handed 310
Helix 12
12
B
239 243Right-handed 310
Helix 13
13
B
247 251Right-handed 310
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There are 8 sheets in PDB entry 4JE0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 16first strand
Strand 2
A
30 39anti-parallel
Strand 3
A
108 118anti-parallel
Strand 4
A
57 58anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
81 88anti-parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
48 53anti-parallel
Strand 5
A
127 136anti-parallel
Strand 6
A
139 147anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
158 169anti-parallel
Strand 3
A
178 186anti-parallel
Strand 4
A
273 280anti-parallel
Strand 5
A
220 225anti-parallel
Strand 6
A
244 245anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
261 269anti-parallel
Strand 3
A
193 201anti-parallel
Strand 4
A
292 298anti-parallel
Strand 5
A
305 310anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 16first strand
Strand 2
B
30 39anti-parallel
Strand 3
B
108 118anti-parallel
Strand 4
B
57 58anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
81 88anti-parallel
Strand 3
B
93 98anti-parallel
Strand 4
B
48 53anti-parallel
Strand 5
B
127 136anti-parallel
Strand 6
B
139 147anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
158 169anti-parallel
Strand 3
B
178 186anti-parallel
Strand 4
B
273 280anti-parallel
Strand 5
B
220 225anti-parallel
Strand 6
B
244 245anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
261 269anti-parallel
Strand 3
B
193 201anti-parallel
Strand 4
B
291 299anti-parallel
Strand 5
B
302 311anti-parallel
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