Analysis of interatomic Contacts of Structural Units in PDB entry:
4JE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JE5 entry

There are 3 chains in PDB entry 4JE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 499
B
 THR 2ILE 498
C
 THR 2GLU 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 4JE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
14 20Right-handed alpha
Helix 3
3
A
46 50Right-handed 310
Helix 4
4
A
88 92Right-handed 310
Helix 5
5
A
98 103Right-handed alpha
Helix 6
6
A
111 126Right-handed alpha
Helix 7
7
A
140 153Right-handed alpha
Helix 8
8
A
166 176Right-handed alpha
Helix 9
9
A
191 201Right-handed alpha
Helix 10
10
A
227 242Right-handed alpha
Helix 11
11
A
251 255Right-handed 310
Helix 12
12
A
262 272Right-handed alpha
Helix 13
13
A
276 284Right-handed alpha
Helix 14
14
A
287 292Right-handed alpha
Helix 15
15
A
308 312Right-handed 310
Helix 16
16
A
320 332Right-handed alpha
Helix 17
17
A
338 383Right-handed alpha
Helix 18
18
A
407 409Right-handed 310
Helix 19
19
A
419 434Right-handed alpha
Helix 20
20
A
442 445Right-handed 310
Helix 21
21
A
455 460Right-handed 310
Helix 22
22
A
477 496Right-handed alpha
Helix 23
23
B
9 13Right-handed 310
Helix 24
24
B
14 20Right-handed alpha
Helix 25
25
B
23 29Right-handed alpha
Helix 26
26
B
46 50Right-handed 310
Helix 27
27
B
88 92Right-handed 310
Helix 28
28
B
98 103Right-handed alpha
Helix 29
29
B
111 126Right-handed alpha
Helix 30
30
B
140 153Right-handed alpha
Helix 31
31
B
166 176Right-handed alpha
Helix 32
32
B
191 201Right-handed alpha
Helix 33
33
B
227 242Right-handed alpha
Helix 34
34
B
251 255Right-handed 310
Helix 35
35
B
262 270Right-handed alpha
Helix 36
36
B
276 284Right-handed alpha
Helix 37
37
B
287 292Right-handed alpha
Helix 38
38
B
308 312Right-handed 310
Helix 39
39
B
320 332Right-handed alpha
Helix 40
40
B
338 383Right-handed alpha
Helix 41
41
B
407 409Right-handed 310
Helix 42
42
B
411 416Right-handed alpha
Helix 43
43
B
419 434Right-handed alpha
Helix 44
44
B
442 445Right-handed 310
Helix 45
45
B
455 460Right-handed 310
Helix 46
46
B
477 496Right-handed alpha
Helix 47
47
C
9 13Right-handed 310
Helix 48
48
C
14 20Right-handed alpha
Helix 49
49
C
23 28Right-handed alpha
Helix 50
50
C
46 50Right-handed 310
Helix 51
51
C
88 92Right-handed 310
Helix 52
52
C
98 103Right-handed alpha
Helix 53
53
C
111 126Right-handed alpha
Helix 54
54
C
140 153Right-handed alpha
Helix 55
55
C
166 176Right-handed alpha
Helix 56
56
C
191 201Right-handed alpha
Helix 57
57
C
227 242Right-handed alpha
Helix 58
58
C
251 255Right-handed 310
Helix 59
59
C
262 271Right-handed alpha
Helix 60
60
C
276 284Right-handed alpha
Helix 61
61
C
287 292Right-handed alpha
Helix 62
62
C
308 312Right-handed 310
Helix 63
63
C
320 332Right-handed alpha
Helix 64
64
C
338 383Right-handed alpha
Helix 65
65
C
407 409Right-handed 310
Helix 66
66
C
419 435Right-handed alpha
Helix 67
67
C
442 445Right-handed 310
Helix 68
68
C
455 460Right-handed 310
Helix 69
69
C
477 496Right-handed alpha
Helix 70
70
D
9 13Right-handed 310
Helix 71
71
D
14 20Right-handed alpha
Helix 72
72
D
23 30Right-handed alpha
Helix 73
73
D
46 50Right-handed 310
Helix 74
74
D
88 92Right-handed 310
Helix 75
75
D
98 103Right-handed alpha
Helix 76
76
D
111 126Right-handed alpha
Helix 77
77
D
140 153Right-handed alpha
Helix 78
78
D
166 176Right-handed alpha
Helix 79
79
D
191 201Right-handed alpha
Helix 80
80
D
227 242Right-handed alpha
Helix 81
81
D
251 255Right-handed 310
Helix 82
82
D
262 272Right-handed alpha
Helix 83
83
D
276 284Right-handed alpha
Helix 84
84
D
287 292Right-handed alpha
Helix 85
85
D
308 312Right-handed 310
Helix 86
86
D
320 333Right-handed alpha
Helix 87
87
D
338 383Right-handed alpha
Helix 88
88
D
407 409Right-handed 310
Helix 89
89
D
419 434Right-handed alpha
Helix 90
90
D
442 445Right-handed 310
Helix 91
91
D
455 460Right-handed alpha
Helix 92
92
D
477 497Right-handed alpha
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There are 18 sheets in PDB entry 4JE5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
B
436 437parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
53 59anti-parallel
Strand 3
B
53 59anti-parallel
Strand 4
B
78 82anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 138first strand
Strand 2
A
314 319anti-parallel
Strand 3
A
297 302anti-parallel
Strand 4
A
244 248parallel
Strand 5
A
211 214parallel
Strand 6
A
158 162parallel
Strand 7
A
179 183parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
189 190anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 405first strand
Strand 2
A
466 472anti-parallel
Strand 3
A
439 440anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
B
38 39parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 138first strand
Strand 2
B
314 319anti-parallel
Strand 3
B
297 302anti-parallel
Strand 4
B
244 248parallel
Strand 5
B
211 214parallel
Strand 6
B
158 162parallel
Strand 7
B
179 183parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
189 190anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 390first strand
Strand 2
B
399 405anti-parallel
Strand 3
B
466 472anti-parallel
Strand 4
B
439 440anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 39first strand
Strand 2
D
436 437parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 82first strand
Strand 2
C
53 59anti-parallel
Strand 3
D
53 59anti-parallel
Strand 4
D
78 82anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 138first strand
Strand 2
C
314 319anti-parallel
Strand 3
C
297 302anti-parallel
Strand 4
C
244 248parallel
Strand 5
C
211 214parallel
Strand 6
C
158 162parallel
Strand 7
C
179 183parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 186first strand
Strand 2
C
189 190anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
389 390first strand
Strand 2
C
399 405anti-parallel
Strand 3
C
466 472anti-parallel
Strand 4
C
439 440anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
436 437first strand
Strand 2
D
38 39parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 138first strand
Strand 2
D
314 319anti-parallel
Strand 3
D
297 302anti-parallel
Strand 4
D
244 248parallel
Strand 5
D
211 214parallel
Strand 6
D
158 162parallel
Strand 7
D
179 183parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 186first strand
Strand 2
D
189 190anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
389 390first strand
Strand 2
D
399 405anti-parallel
Strand 3
D
466 472anti-parallel
Strand 4
D
439 440anti-parallel
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