Analysis of interatomic Contacts of Structural Units in PDB entry:
4JEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JEP entry

There are 2 chains in PDB entry 4JEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 33GLU 629
B
 ALA 36ALA 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 4JEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 58Right-handed alpha
Helix 2
2
A
97 100Right-handed 310
Helix 3
3
A
111 124Right-handed alpha
Helix 4
4
A
125 130Right-handed 310
Helix 5
5
A
135 140Right-handed 310
Helix 6
6
A
141 168Right-handed alpha
Helix 7
7
A
169 180Right-handed alpha
Helix 8
8
A
197 212Right-handed alpha
Helix 9
9
A
232 248Right-handed alpha
Helix 10
10
A
325 327Right-handed 310
Helix 11
11
A
328 341Right-handed alpha
Helix 12
12
A
389 396Right-handed alpha
Helix 13
13
A
408 416Right-handed alpha
Helix 14
14
A
423 428Right-handed alpha
Helix 15
15
A
441 453Right-handed alpha
Helix 16
16
A
473 481Right-handed alpha
Helix 17
17
A
491 504Right-handed alpha
Helix 18
18
A
514 526Right-handed alpha
Helix 19
19
A
556 574Right-handed alpha
Helix 20
20
A
600 610Right-handed alpha
Helix 21
21
A
611 620Right-handed alpha
Helix 22
22
A
623 627Right-handed 310
Helix 23
23
B
37 58Right-handed alpha
Helix 24
24
B
97 100Right-handed 310
Helix 25
25
B
111 124Right-handed alpha
Helix 26
26
B
136 140Right-handed 310
Helix 27
27
B
141 167Right-handed alpha
Helix 28
28
B
169 180Right-handed alpha
Helix 29
29
B
197 212Right-handed alpha
Helix 30
30
B
232 248Right-handed alpha
Helix 31
31
B
328 343Right-handed alpha
Helix 32
32
B
389 396Right-handed alpha
Helix 33
33
B
406 415Right-handed alpha
Helix 34
34
B
423 429Right-handed alpha
Helix 35
35
B
441 453Right-handed alpha
Helix 36
36
B
473 481Right-handed alpha
Helix 37
37
B
491 503Right-handed alpha
Helix 38
38
B
514 527Right-handed alpha
Helix 39
39
B
556 574Right-handed alpha
Helix 40
40
B
600 610Right-handed alpha
Helix 41
41
B
611 620Right-handed alpha
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There are 14 sheets in PDB entry 4JEP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
75 88anti-parallel
Strand 3
A
109 110anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
75 88anti-parallel
Strand 3
A
60 71anti-parallel
Strand 4
A
181 187parallel
Strand 5
A
221 222parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
318 324anti-parallel
Strand 3
A
283 287anti-parallel
Strand 4
A
274 278anti-parallel
Strand 5
A
487 490parallel
Strand 6
A
581 583parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
351 354anti-parallel
Strand 3
A
435 438parallel
Strand 4
A
362 364anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 372first strand
Strand 2
A
378 380anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 531first strand
Strand 2
A
538 540anti-parallel
Strand 3
A
547 549anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 67first strand
Strand 2
B
79 88anti-parallel
Strand 3
B
92 95anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 67first strand
Strand 2
B
79 88anti-parallel
Strand 3
B
101 105anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Strand 2
B
75 77anti-parallel
Strand 3
B
70 71anti-parallel
Strand 4
B
186 187parallel
Strand 5
B
229 230parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 182first strand
Strand 2
B
221 222parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 324first strand
Strand 2
B
283 286anti-parallel
Strand 3
B
274 278anti-parallel
Strand 4
B
487 490parallel
Strand 5
B
581 583parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 303first strand
Strand 2
B
318 319anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 348first strand
Strand 2
B
351 354anti-parallel
Strand 3
B
435 438parallel
Strand 4
B
362 364anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 373first strand
Strand 2
B
377 379anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il