Analysis of interatomic Contacts of Structural Units in PDB entry:
4JEU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JEU entry

There are 2 chains in PDB entry 4JEU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3ILE 592
B
 LYS 2TYR 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4JEU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 18Right-handed alpha
Helix 2
2
A
34 43Right-handed alpha
Helix 3
3
A
46 52Right-handed alpha
Helix 4
4
A
80 89Right-handed alpha
Helix 5
5
A
111 121Right-handed alpha
Helix 6
6
A
122 125Right-handed 310
Helix 7
7
A
151 158Right-handed alpha
Helix 8
8
A
164 183Right-handed alpha
Helix 9
9
A
195 214Right-handed alpha
Helix 10
10
A
234 238Right-handed 310
Helix 11
11
A
239 244Right-handed alpha
Helix 12
12
A
248 257Right-handed alpha
Helix 13
13
A
285 292Right-handed alpha
Helix 14
14
A
295 313Right-handed alpha
Helix 15
15
A
334 336Right-handed 310
Helix 16
16
A
337 359Right-handed alpha
Helix 17
17
A
360 375Right-handed alpha
Helix 18
18
A
386 396Right-handed alpha
Helix 19
19
A
400 415Right-handed alpha
Helix 20
20
A
419 431Right-handed alpha
Helix 21
21
A
433 443Right-handed alpha
Helix 22
22
A
444 447Right-handed 310
Helix 23
23
A
473 477Right-handed 310
Helix 24
24
A
480 491Right-handed alpha
Helix 25
25
A
547 561Right-handed alpha
Helix 26
26
A
574 584Right-handed alpha
Helix 27
27
B
30 62Right-handed alpha
Helix 28
28
B
68 105Right-handed alpha
Helix 29
29
B
110 157Right-handed alpha
Helix 30
30
B
161 171Right-handed alpha
Helix 31
31
B
185 212Right-handed alpha
Helix 32
32
B
212 226Right-handed alpha
Helix 33
33
B
228 231Right-handed 310
Helix 34
34
B
232 239Right-handed alpha
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There are 4 sheets in PDB entry 4JEU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
29 33parallel
Strand 3
A
72 77parallel
Strand 4
A
102 106parallel
Strand 5
A
127 132parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
564 569parallel
Strand 4
A
536 541parallel
Strand 5
A
229 233parallel
Strand 6
A
188 191parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 269first strand
Strand 2
A
274 280anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
572 573parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il