Analysis of interatomic Contacts of Structural Units in PDB entry:
4JF7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JF7 entry

There are 3 chains in PDB entry 4JF7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	THR 62	SER 565
A	ILE 61	SER 565
B	LEU 65	GLN 359

There are 37 helices in PDB entry 4JF7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	D	65	70	Right-handed alpha
Helix 2	2	D	71	81	Right-handed alpha
Helix 3	3	D	81	100	Right-handed alpha
Helix 4	4	D	133	138	Right-handed alpha
Helix 5	5	D	246	253	Right-handed alpha
Helix 6	6	D	313	320	Right-handed alpha
Helix 7	7	D	328	333	Right-handed alpha
Helix 8	8	D	336	347	Right-handed alpha
Helix 9	9	D	445	449	Right-handed 310
Helix 10	10	A	62	81	Right-handed alpha
Helix 11	11	A	81	99	Right-handed alpha
Helix 12	12	A	135	138	Right-handed 310
Helix 13	13	A	246	253	Right-handed alpha
Helix 14	14	A	313	320	Right-handed alpha
Helix 15	15	A	336	347	Right-handed alpha
Helix 16	16	A	471	475	Right-handed 310
Helix 17	17	B	71	81	Right-handed alpha
Helix 18	18	B	81	109	Right-handed alpha
Helix 19	19	B	115	117	Right-handed 310
Helix 20	20	B	120	125	Right-handed alpha
Helix 21	21	B	135	138	Right-handed 310
Helix 22	22	B	246	253	Right-handed alpha
Helix 23	23	B	313	320	Right-handed alpha
Helix 24	24	B	329	333	Right-handed 310
Helix 25	25	B	336	347	Right-handed alpha
Helix 26	26	B	445	449	Right-handed 310
Helix 27	27	B	471	475	Right-handed 310
Helix 28	28	C	65	81	Right-handed alpha
Helix 29	29	C	81	99	Right-handed alpha
Helix 30	30	C	113	117	Right-handed 310
Helix 31	31	C	120	125	Right-handed alpha
Helix 32	32	C	133	138	Right-handed alpha
Helix 33	33	C	246	253	Right-handed alpha
Helix 34	34	C	313	320	Right-handed alpha
Helix 35	35	C	336	346	Right-handed alpha
Helix 36	36	C	445	449	Right-handed 310
Helix 37	37	C	471	475	Right-handed 310

There are 29 sheets in PDB entry 4JF7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	145	first strand
Strand 2	D	553	564	anti-parallel
Strand 3	D	536	546	anti-parallel
Strand 4	D	521	531	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	169	first strand
Strand 2	D	174	181	anti-parallel
Strand 3	D	192	202	anti-parallel
Strand 4	D	208	218	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	232	first strand
Strand 2	D	235	242	anti-parallel
Strand 3	D	258	265	anti-parallel
Strand 4	D	270	275	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	289	first strand
Strand 2	D	300	309	anti-parallel
Strand 3	D	356	366	anti-parallel
Strand 4	D	349	350	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	297	first strand
Strand 2	D	300	309	anti-parallel
Strand 3	D	356	366	anti-parallel
Strand 4	D	376	379	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	396	first strand
Strand 2	D	399	404	anti-parallel
Strand 3	D	414	423	anti-parallel
Strand 4	D	426	434	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	466	468	first strand
Strand 2	D	484	489	anti-parallel
Strand 3	D	498	503	anti-parallel
Strand 4	D	508	513	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	B	111	113	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	145	first strand
Strand 2	A	553	564	anti-parallel
Strand 3	A	536	546	anti-parallel
Strand 4	A	521	531	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	169	first strand
Strand 2	A	174	181	anti-parallel
Strand 3	A	192	202	anti-parallel
Strand 4	A	208	218	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	232	first strand
Strand 2	A	235	242	anti-parallel
Strand 3	A	259	265	anti-parallel
Strand 4	A	270	275	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	289	first strand
Strand 2	A	300	309	anti-parallel
Strand 3	A	356	366	anti-parallel
Strand 4	A	349	350	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	300	309	anti-parallel
Strand 3	A	356	366	anti-parallel
Strand 4	A	376	379	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	396	first strand
Strand 2	A	399	404	anti-parallel
Strand 3	A	414	423	anti-parallel
Strand 4	A	426	434	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	468	first strand
Strand 2	A	484	489	anti-parallel
Strand 3	A	498	503	anti-parallel
Strand 4	A	508	513	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	146	first strand
Strand 2	B	553	564	anti-parallel
Strand 3	B	536	546	anti-parallel
Strand 4	B	521	531	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	169	first strand
Strand 2	B	174	181	anti-parallel
Strand 3	B	192	202	anti-parallel
Strand 4	B	208	218	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	232	first strand
Strand 2	B	235	242	anti-parallel
Strand 3	B	259	265	anti-parallel
Strand 4	B	270	274	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	289	first strand
Strand 2	B	300	309	anti-parallel
Strand 3	B	356	366	anti-parallel
Strand 4	B	349	350	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	300	309	anti-parallel
Strand 3	B	356	366	anti-parallel
Strand 4	B	376	379	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	396	first strand
Strand 2	B	399	404	anti-parallel
Strand 3	B	414	423	anti-parallel
Strand 4	B	426	434	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	468	first strand
Strand 2	B	484	489	anti-parallel
Strand 3	B	498	503	anti-parallel
Strand 4	B	508	513	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	146	first strand
Strand 2	C	553	564	anti-parallel
Strand 3	C	536	546	anti-parallel
Strand 4	C	521	531	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	169	first strand
Strand 2	C	174	181	anti-parallel
Strand 3	C	192	202	anti-parallel
Strand 4	C	208	218	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	232	first strand
Strand 2	C	235	242	anti-parallel
Strand 3	C	259	265	anti-parallel
Strand 4	C	270	274	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	289	first strand
Strand 2	C	300	309	anti-parallel
Strand 3	C	356	366	anti-parallel
Strand 4	C	349	350	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	300	309	anti-parallel
Strand 3	C	356	366	anti-parallel
Strand 4	C	376	379	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	396	first strand
Strand 2	C	399	404	anti-parallel
Strand 3	C	414	422	anti-parallel
Strand 4	C	427	434	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	468	first strand
Strand 2	C	483	489	anti-parallel
Strand 3	C	498	504	anti-parallel
Strand 4	C	508	513	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JF7

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JF7