Analysis of interatomic Contacts of Structural Units in PDB entry:
4JFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JFB entry

There are 4 chains in PDB entry 4JFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 1PHE 340
B
ALA 1PHE 340
C
ALA 1PHE 340
D
ALA 1TYR 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 4JFB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
72 77Right-handed 310
Helix 2
2
A
105 110Right-handed alpha
Helix 3
3
A
197 202Right-handed alpha
Helix 4
4
B
72 77Right-handed 310
Helix 5
5
B
105 110Right-handed alpha
Helix 6
6
B
197 202Right-handed alpha
Helix 7
7
C
105 110Right-handed alpha
Helix 8
8
C
197 202Right-handed alpha
Helix 9
9
D
72 77Right-handed 310
Helix 10
10
D
105 110Right-handed alpha
Helix 11
11
D
127 131Right-handed 310
Helix 12
12
D
165 169Right-handed 310
Helix 13
13
D
197 202Right-handed alpha
Helix 14
14
E
72 77Right-handed 310
Helix 15
15
E
105 110Right-handed alpha
Helix 16
16
E
142 147Right-handed alpha
Helix 17
17
E
165 169Right-handed 310
Helix 18
18
E
197 202Right-handed alpha
Helix 19
19
F
72 77Right-handed 310
Helix 20
20
F
105 110Right-handed alpha
Helix 21
21
F
197 202Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 4JFB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 19 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 5first strand
Strand 2
A
36 37first strand
Strand 3
A
40 50first strand
Strand 4
A
55 66anti-parallel
Strand 5
A
80 90anti-parallel
Strand 6
A
94 101anti-parallel
Strand 7
A
133 141anti-parallel
Strand 8
A
151 158anti-parallel
Strand 9
A
173 182anti-parallel
Strand 10
A
185 195anti-parallel
Strand 11
A
210 222anti-parallel
Strand 12
A
225 242anti-parallel
Strand 13
A
247 263anti-parallel
Strand 14
A
269 283anti-parallel
Strand 15
A
287 302anti-parallel
Strand 16
A
307 316anti-parallel
Strand 17
A
331 340anti-parallel
Strand 18
A
9 24anti-parallel
Strand 19
A
36 37anti-parallel
Back to list of sheets
Back to top of page

There are 19 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 5first strand
Strand 2
B
36 37first strand
Strand 3
B
40 50first strand
Strand 4
B
55 66anti-parallel
Strand 5
B
80 90anti-parallel
Strand 6
B
94 102anti-parallel
Strand 7
B
132 141anti-parallel
Strand 8
B
151 158anti-parallel
Strand 9
B
173 182anti-parallel
Strand 10
B
185 195anti-parallel
Strand 11
B
210 222anti-parallel
Strand 12
B
225 235anti-parallel
Strand 13
B
253 263anti-parallel
Strand 14
B
269 283anti-parallel
Strand 15
B
287 304anti-parallel
Strand 16
B
307 316anti-parallel
Strand 17
B
331 340anti-parallel
Strand 18
B
9 23anti-parallel
Strand 19
B
36 37anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
239 242first strand
Strand 2
B
247 250anti-parallel
Back to list of sheets
Back to top of page

There are 19 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2 5first strand
Strand 2
C
36 37first strand
Strand 3
C
40 50first strand
Strand 4
C
55 66anti-parallel
Strand 5
C
80 90anti-parallel
Strand 6
C
94 102anti-parallel
Strand 7
C
132 141anti-parallel
Strand 8
C
151 158anti-parallel
Strand 9
C
173 182anti-parallel
Strand 10
C
185 195anti-parallel
Strand 11
C
210 222anti-parallel
Strand 12
C
225 242anti-parallel
Strand 13
C
247 263anti-parallel
Strand 14
C
269 283anti-parallel
Strand 15
C
287 302anti-parallel
Strand 16
C
307 316anti-parallel
Strand 17
C
331 340anti-parallel
Strand 18
C
9 23anti-parallel
Strand 19
C
36 37anti-parallel
Back to list of sheets
Back to top of page

There are 19 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2 5first strand
Strand 2
D
36 37first strand
Strand 3
D
40 50first strand
Strand 4
D
55 66anti-parallel
Strand 5
D
80 90anti-parallel
Strand 6
D
94 101anti-parallel
Strand 7
D
133 141anti-parallel
Strand 8
D
151 158anti-parallel
Strand 9
D
173 182anti-parallel
Strand 10
D
185 195anti-parallel
Strand 11
D
210 222anti-parallel
Strand 12
D
225 235anti-parallel
Strand 13
D
253 263anti-parallel
Strand 14
D
269 283anti-parallel
Strand 15
D
287 304anti-parallel
Strand 16
D
307 316anti-parallel
Strand 17
D
331 340anti-parallel
Strand 18
D
9 23anti-parallel
Strand 19
D
36 37anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
239 242first strand
Strand 2
D
247 250anti-parallel
Back to list of sheets
Back to top of page

There are 19 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
2 6first strand
Strand 2
E
36 37first strand
Strand 3
E
40 50first strand
Strand 4
E
55 66anti-parallel
Strand 5
E
80 90anti-parallel
Strand 6
E
94 101anti-parallel
Strand 7
E
133 141anti-parallel
Strand 8
E
151 158anti-parallel
Strand 9
E
173 182anti-parallel
Strand 10
E
185 195anti-parallel
Strand 11
E
210 222anti-parallel
Strand 12
E
225 235anti-parallel
Strand 13
E
253 263anti-parallel
Strand 14
E
269 283anti-parallel
Strand 15
E
287 304anti-parallel
Strand 16
E
307 316anti-parallel
Strand 17
E
331 340anti-parallel
Strand 18
E
9 23anti-parallel
Strand 19
E
36 37anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
239 242first strand
Strand 2
E
247 250anti-parallel
Back to list of sheets
Back to top of page

There are 19 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
2 5first strand
Strand 2
F
36 37first strand
Strand 3
F
40 50first strand
Strand 4
F
55 66anti-parallel
Strand 5
F
80 90anti-parallel
Strand 6
F
94 102anti-parallel
Strand 7
F
132 141anti-parallel
Strand 8
F
151 158anti-parallel
Strand 9
F
173 182anti-parallel
Strand 10
F
185 195anti-parallel
Strand 11
F
210 222anti-parallel
Strand 12
F
225 235anti-parallel
Strand 13
F
253 263anti-parallel
Strand 14
F
269 283anti-parallel
Strand 15
F
287 302anti-parallel
Strand 16
F
307 316anti-parallel
Strand 17
F
331 340anti-parallel
Strand 18
F
9 23anti-parallel
Strand 19
F
36 37anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
239 242first strand
Strand 2
F
247 250anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il