Analysis of interatomic Contacts of Structural Units in PDB entry:
4JFG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JFG entry

There are 12 chains in PDB entry 4JFG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	LEU 64
A	VAL 68	GLY 232
B	GLY 4	LEU 64
B	VAL 68	THR 230
C	GLY 4	LEU 64
C	VAL 68	HIS 231
D	GLU 5	LEU 64
D	VAL 68	GLY 228
E	GLY 4	LEU 64
E	VAL 68	GLY 232
F	GLU 5	LEU 64
F	VAL 68	LYS 162

There are 39 helices in PDB entry 4JFG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	4	8	Right-handed 310
Helix 2	2	A	57	66	Right-handed alpha
Helix 3	3	A	68	72	Right-handed 310
Helix 4	4	A	75	81	Right-handed 310
Helix 5	5	A	82	87	Right-handed alpha
Helix 6	6	B	56	59	Right-handed 310
Helix 7	7	B	60	66	Right-handed alpha
Helix 8	8	B	68	72	Right-handed 310
Helix 9	9	B	75	81	Right-handed 310
Helix 10	10	B	82	87	Right-handed alpha
Helix 11	11	C	4	9	Right-handed 310
Helix 12	12	C	56	59	Right-handed 310
Helix 13	13	C	60	66	Right-handed alpha
Helix 14	14	C	68	72	Right-handed 310
Helix 15	15	C	75	81	Right-handed 310
Helix 16	16	C	82	87	Right-handed alpha
Helix 17	17	D	56	59	Right-handed 310
Helix 18	18	D	60	66	Right-handed alpha
Helix 19	19	D	68	72	Right-handed 310
Helix 20	20	D	78	81	Right-handed 310
Helix 21	21	D	82	87	Right-handed alpha
Helix 22	22	E	56	59	Right-handed 310
Helix 23	23	E	60	66	Right-handed alpha
Helix 24	24	E	68	72	Right-handed 310
Helix 25	25	E	75	81	Right-handed 310
Helix 26	26	E	82	87	Right-handed alpha
Helix 27	27	F	56	59	Right-handed 310
Helix 28	28	F	60	66	Right-handed alpha
Helix 29	29	F	82	87	Right-handed alpha
Helix 30	30	G	4	8	Right-handed 310
Helix 31	31	G	56	59	Right-handed 310
Helix 32	32	G	60	66	Right-handed alpha
Helix 33	33	G	75	81	Right-handed 310
Helix 34	34	G	82	87	Right-handed alpha
Helix 35	35	G	156	159	Right-handed 310
Helix 36	36	H	4	8	Right-handed 310
Helix 37	37	H	57	66	Right-handed alpha
Helix 38	38	H	75	81	Right-handed 310
Helix 39	39	H	82	87	Right-handed alpha

There are 8 sheets in PDB entry 4JFG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	22	first strand
Strand 2	A	25	36	anti-parallel
Strand 3	A	41	48	anti-parallel
Strand 4	A	217	227	anti-parallel
Strand 5	A	199	208	anti-parallel
Strand 6	A	148	155	anti-parallel
Strand 7	A	160	170	anti-parallel
Strand 8	A	176	187	anti-parallel
Strand 9	A	92	100	anti-parallel
Strand 10	A	105	115	anti-parallel
Strand 11	A	118	128	anti-parallel
Strand 12	A	11	22	parallel

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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	208	first strand
Strand 2	B	217	223	anti-parallel
Strand 3	B	41	48	anti-parallel
Strand 4	B	25	36	anti-parallel
Strand 5	B	12	22	anti-parallel
Strand 6	B	118	128	parallel
Strand 7	B	105	115	anti-parallel
Strand 8	B	92	100	anti-parallel
Strand 9	B	176	187	anti-parallel
Strand 10	B	160	170	anti-parallel
Strand 11	B	150	155	anti-parallel
Strand 12	B	199	201	anti-parallel
Strand 13	B	226	227	anti-parallel

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There are 12 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	22	first strand
Strand 2	C	25	36	anti-parallel
Strand 3	C	41	48	anti-parallel
Strand 4	C	217	227	anti-parallel
Strand 5	C	199	208	anti-parallel
Strand 6	C	148	155	anti-parallel
Strand 7	C	160	170	anti-parallel
Strand 8	C	176	187	anti-parallel
Strand 9	C	92	100	anti-parallel
Strand 10	C	105	115	anti-parallel
Strand 11	C	118	128	anti-parallel
Strand 12	C	12	22	parallel

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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	22	first strand
Strand 2	D	25	36	anti-parallel
Strand 3	D	41	48	anti-parallel
Strand 4	D	217	227	anti-parallel
Strand 5	D	199	208	anti-parallel
Strand 6	D	150	154	anti-parallel
Strand 7	D	161	170	anti-parallel
Strand 8	D	176	186	anti-parallel
Strand 9	D	92	100	anti-parallel
Strand 10	D	105	115	anti-parallel
Strand 11	D	118	128	anti-parallel
Strand 12	D	11	22	parallel

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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	22	first strand
Strand 2	E	25	36	anti-parallel
Strand 3	E	41	48	anti-parallel
Strand 4	E	217	227	anti-parallel
Strand 5	E	199	208	anti-parallel
Strand 6	E	148	155	anti-parallel
Strand 7	E	160	170	anti-parallel
Strand 8	E	176	187	anti-parallel
Strand 9	E	92	100	anti-parallel
Strand 10	E	105	115	anti-parallel
Strand 11	E	118	128	anti-parallel
Strand 12	E	12	22	parallel

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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	154	first strand
Strand 2	F	161	170	anti-parallel
Strand 3	F	176	187	anti-parallel
Strand 4	F	92	100	anti-parallel
Strand 5	F	105	115	anti-parallel
Strand 6	F	118	128	anti-parallel
Strand 7	F	11	22	parallel
Strand 8	F	25	36	anti-parallel
Strand 9	F	41	48	anti-parallel
Strand 10	F	217	227	anti-parallel
Strand 11	F	200	208	anti-parallel

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There are 12 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	22	first strand
Strand 2	G	25	35	anti-parallel
Strand 3	G	41	48	anti-parallel
Strand 4	G	217	227	anti-parallel
Strand 5	G	199	208	anti-parallel
Strand 6	G	150	155	anti-parallel
Strand 7	G	160	170	anti-parallel
Strand 8	G	176	187	anti-parallel
Strand 9	G	92	100	anti-parallel
Strand 10	G	105	115	anti-parallel
Strand 11	G	118	128	anti-parallel
Strand 12	G	12	22	parallel

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There are 12 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	22	first strand
Strand 2	H	25	36	anti-parallel
Strand 3	H	41	48	anti-parallel
Strand 4	H	217	227	anti-parallel
Strand 5	H	199	208	anti-parallel
Strand 6	H	148	155	anti-parallel
Strand 7	H	160	170	anti-parallel
Strand 8	H	176	187	anti-parallel
Strand 9	H	92	100	anti-parallel
Strand 10	H	105	115	anti-parallel
Strand 11	H	118	128	anti-parallel
Strand 12	H	11	22	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JFG

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JFG