Analysis of interatomic Contacts of Structural Units in PDB entry:
4JGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JGA entry

There are 2 chains in PDB entry 4JGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7VAL 428
B
 ASN 7VAL 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4JGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 34Right-handed alpha
Helix 2
2
A
67 71Right-handed 310
Helix 3
3
A
73 75Right-handed 310
Helix 4
4
A
76 82Right-handed alpha
Helix 5
5
A
84 102Right-handed alpha
Helix 6
6
A
107 113Right-handed alpha
Helix 7
7
A
124 139Right-handed alpha
Helix 8
8
A
146 152Right-handed alpha
Helix 9
9
A
154 165Right-handed alpha
Helix 10
10
A
175 177Right-handed 310
Helix 11
11
A
178 193Right-handed alpha
Helix 12
12
A
209 219Right-handed alpha
Helix 13
13
A
229 233Right-handed 310
Helix 14
14
A
258 264Right-handed alpha
Helix 15
15
A
291 305Right-handed alpha
Helix 16
16
A
308 312Right-handed 310
Helix 17
17
A
322 338Right-handed alpha
Helix 18
18
A
349 354Right-handed alpha
Helix 19
19
A
356 358Right-handed 310
Helix 20
20
A
359 375Right-handed alpha
Helix 21
21
B
24 34Right-handed alpha
Helix 22
22
B
67 71Right-handed 310
Helix 23
23
B
73 75Right-handed 310
Helix 24
24
B
76 82Right-handed alpha
Helix 25
25
B
84 102Right-handed alpha
Helix 26
26
B
107 113Right-handed alpha
Helix 27
27
B
124 139Right-handed alpha
Helix 28
28
B
146 152Right-handed alpha
Helix 29
29
B
154 165Right-handed alpha
Helix 30
30
B
175 177Right-handed 310
Helix 31
31
B
178 193Right-handed alpha
Helix 32
32
B
209 219Right-handed alpha
Helix 33
33
B
229 233Right-handed 310
Helix 34
34
B
258 264Right-handed alpha
Helix 35
35
B
291 305Right-handed alpha
Helix 36
36
B
308 312Right-handed 310
Helix 37
37
B
322 338Right-handed alpha
Helix 38
38
B
349 354Right-handed alpha
Helix 39
39
B
356 358Right-handed 310
Helix 40
40
B
359 375Right-handed alpha
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There are 6 sheets in PDB entry 4JGA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
114 119parallel
Strand 3
A
198 205parallel
Strand 4
A
249 257anti-parallel
Strand 5
A
10 18anti-parallel
Strand 6
A
270 279anti-parallel
Strand 7
A
417 424anti-parallel
Strand 8
A
406 413anti-parallel
Strand 9
A
314 316parallel
Strand 10
A
345 347parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
54 56anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
400 401anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
114 119parallel
Strand 3
B
198 205parallel
Strand 4
B
249 257anti-parallel
Strand 5
B
10 18anti-parallel
Strand 6
B
270 279anti-parallel
Strand 7
B
417 424anti-parallel
Strand 8
B
406 413anti-parallel
Strand 9
B
314 316parallel
Strand 10
B
345 347parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
54 56anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 377first strand
Strand 2
B
400 401anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il