Analysis of interatomic Contacts of Structural Units in PDB entry:
4JGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JGB entry

There are 2 chains in PDB entry 4JGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 209
B
 MET 1TYR 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4JGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
51 60Right-handed alpha
Helix 3
3
A
75 77Right-handed 310
Helix 4
4
A
78 94Right-handed alpha
Helix 5
5
A
103 106Right-handed 310
Helix 6
6
A
116 118Right-handed 310
Helix 7
7
A
122 124Right-handed 310
Helix 8
8
A
125 140Right-handed alpha
Helix 9
9
A
184 198Right-handed alpha
Helix 10
10
B
11 24Right-handed alpha
Helix 11
11
B
51 60Right-handed alpha
Helix 12
12
B
75 77Right-handed 310
Helix 13
13
B
78 94Right-handed alpha
Helix 14
14
B
103 106Right-handed 310
Helix 15
15
B
116 118Right-handed 310
Helix 16
16
B
122 124Right-handed 310
Helix 17
17
B
125 142Right-handed alpha
Helix 18
18
B
184 198Right-handed alpha
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There are 6 sheets in PDB entry 4JGB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
27 32parallel
Strand 3
A
3 7parallel
Strand 4
A
64 67parallel
Strand 5
A
97 101parallel
Strand 6
A
146 151parallel
Strand 7
A
203 208parallel
Strand 8
A
166 168anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
113 114anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
181 183parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
27 32parallel
Strand 3
B
3 7parallel
Strand 4
B
64 67parallel
Strand 5
B
97 101parallel
Strand 6
B
146 151parallel
Strand 7
B
203 208parallel
Strand 8
B
166 168anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
113 114anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 157first strand
Strand 2
B
181 183parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il