Analysis of interatomic Contacts of Structural Units in PDB entry:
4JGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JGE entry

There are 4 chains in PDB entry 4JGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ILE 57
A
 PHE 61ILE 219
B
 SER 1ILE 57
B
 PHE 61ALA 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4JGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 54Right-handed 310
Helix 2
2
A
61 65Right-handed 310
Helix 3
3
A
67 71Right-handed 310
Helix 4
4
A
73 80Right-handed alpha
Helix 5
5
A
183 188Right-handed alpha
Helix 6
6
B
49 54Right-handed 310
Helix 7
7
B
61 65Right-handed 310
Helix 8
8
B
67 71Right-handed 310
Helix 9
9
B
73 80Right-handed alpha
Helix 10
10
B
183 188Right-handed alpha
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There are 2 sheets in PDB entry 4JGE. Click on sheet of interest to get list of strands forming it: A, B,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
151 162anti-parallel
Strand 3
A
168 178anti-parallel
Strand 4
A
85 93anti-parallel
Strand 5
A
98 108anti-parallel
Strand 6
A
111 121anti-parallel
Strand 7
A
6 15parallel
Strand 8
A
18 28anti-parallel
Strand 9
A
35 41anti-parallel
Strand 10
A
206 216anti-parallel
Strand 11
A
192 202anti-parallel
Strand 12
A
140 148anti-parallel
Strand 13
A
151 162anti-parallel
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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
151 162anti-parallel
Strand 3
B
168 178anti-parallel
Strand 4
B
85 93anti-parallel
Strand 5
B
98 108anti-parallel
Strand 6
B
111 121anti-parallel
Strand 7
B
6 15parallel
Strand 8
B
18 29anti-parallel
Strand 9
B
34 41anti-parallel
Strand 10
B
206 216anti-parallel
Strand 11
B
192 202anti-parallel
Strand 12
B
140 148anti-parallel
Strand 13
B
151 162anti-parallel
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