Analysis of interatomic Contacts of Structural Units in PDB entry:
4JGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JGI entry

There are 2 chains in PDB entry 4JGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1GLY 211
B
 VAL 1GLY 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4JGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 13Right-handed alpha
Helix 2
2
A
15 30Right-handed alpha
Helix 3
3
A
31 55Right-handed alpha
Helix 4
4
A
59 78Right-handed alpha
Helix 5
5
A
103 116Right-handed alpha
Helix 6
6
A
128 140Right-handed alpha
Helix 7
7
A
150 167Right-handed alpha
Helix 8
8
A
169 173Right-handed 310
Helix 9
9
A
183 191Right-handed alpha
Helix 10
10
A
198 210Right-handed alpha
Helix 11
11
B
3 13Right-handed alpha
Helix 12
12
B
15 30Right-handed alpha
Helix 13
13
B
32 55Right-handed alpha
Helix 14
14
B
59 78Right-handed alpha
Helix 15
15
B
79 81Right-handed 310
Helix 16
16
B
103 116Right-handed alpha
Helix 17
17
B
128 140Right-handed alpha
Helix 18
18
B
150 167Right-handed alpha
Helix 19
19
B
169 173Right-handed 310
Helix 20
20
B
183 191Right-handed alpha
Helix 21
21
B
198 210Right-handed alpha
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There are 2 sheets in PDB entry 4JGI. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
91 96parallel
Strand 3
A
143 147parallel
Strand 4
A
174 178parallel
Strand 5
A
194 195parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
91 96parallel
Strand 3
B
143 147parallel
Strand 4
B
174 178parallel
Strand 5
B
194 196parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il