Analysis of interatomic Contacts of Structural Units in PDB entry:
4JGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JGJ entry

There are 4 chains in PDB entry 4JGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 28ILE 137
B
 ALA 28ILE 137
X
 UNK 1UNK 8
Y
 UNK 1UNK 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 4JGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
68 70Right-handed 310
Helix 2
2
B
68 70Right-handed 310
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There are 2 sheets in PDB entry 4JGJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
101 103anti-parallel
Strand 3
B
93 95anti-parallel
Strand 4
A
82 85anti-parallel
Strand 5
A
72 77anti-parallel
Strand 6
A
58 63anti-parallel
Strand 7
A
112 119anti-parallel
Strand 8
A
125 135anti-parallel
Strand 9
A
31 40parallel
Strand 10
X
2 4anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
101 103anti-parallel
Strand 3
A
93 95anti-parallel
Strand 4
B
82 85anti-parallel
Strand 5
B
72 77anti-parallel
Strand 6
B
58 63anti-parallel
Strand 7
B
112 119anti-parallel
Strand 8
B
125 135anti-parallel
Strand 9
B
30 40parallel
Strand 10
Y
3 4anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il