Analysis of interatomic Contacts of Structural Units in PDB entry:
4JGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JGQ entry

There are 2 chains in PDB entry 4JGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 40THR 242
B
 ASP 41THR 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4JGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 80Right-handed alpha
Helix 2
2
A
85 97Right-handed alpha
Helix 3
3
A
131 141Right-handed alpha
Helix 4
4
A
182 193Right-handed alpha
Helix 5
5
A
213 218Right-handed 310
Helix 6
6
B
42 80Right-handed alpha
Helix 7
7
B
85 98Right-handed alpha
Helix 8
8
B
131 141Right-handed alpha
Helix 9
9
B
182 193Right-handed alpha
Helix 10
10
B
213 218Right-handed 310
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There are 6 sheets in PDB entry 4JGQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
103 110anti-parallel
Strand 3
A
172 181anti-parallel
Strand 4
A
157 166anti-parallel
Strand 5
A
144 145anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
103 110anti-parallel
Strand 3
A
172 181anti-parallel
Strand 4
A
157 166anti-parallel
Strand 5
A
149 150anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 211first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
232 237anti-parallel
Strand 4
A
223 226anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
103 110anti-parallel
Strand 3
B
172 181anti-parallel
Strand 4
B
157 166anti-parallel
Strand 5
B
144 145anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
103 110anti-parallel
Strand 3
B
172 181anti-parallel
Strand 4
B
157 166anti-parallel
Strand 5
B
149 150anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 211first strand
Strand 2
B
197 202anti-parallel
Strand 3
B
232 237anti-parallel
Strand 4
B
223 226anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il