Analysis of interatomic Contacts of Structural Units in PDB entry:
4JGT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JGT entry

There are 6 chains in PDB entry 4JGT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9THR 247
A
 GLY 249VAL 288
B
 GLY 8THR 247
B
 GLY 249VAL 288
C
 SER 9THR 247
C
 GLY 249VAL 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4JGT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 22Right-handed alpha
Helix 2
2
A
38 42Right-handed 310
Helix 3
3
A
44 52Right-handed alpha
Helix 4
4
A
78 89Right-handed alpha
Helix 5
5
A
109 120Right-handed alpha
Helix 6
6
A
130 138Right-handed alpha
Helix 7
7
A
159 161Right-handed 310
Helix 8
8
A
165 176Right-handed alpha
Helix 9
9
A
185 190Right-handed alpha
Helix 10
10
A
212 217Right-handed 310
Helix 11
11
A
225 236Right-handed alpha
Helix 12
12
A
254 264Right-handed alpha
Helix 13
13
A
274 284Right-handed alpha
Helix 14
14
B
12 22Right-handed alpha
Helix 15
15
B
38 42Right-handed 310
Helix 16
16
B
44 52Right-handed alpha
Helix 17
17
B
78 89Right-handed alpha
Helix 18
18
B
109 120Right-handed alpha
Helix 19
19
B
130 138Right-handed alpha
Helix 20
20
B
159 161Right-handed 310
Helix 21
21
B
165 176Right-handed alpha
Helix 22
22
B
185 190Right-handed alpha
Helix 23
23
B
212 217Right-handed 310
Helix 24
24
B
225 236Right-handed alpha
Helix 25
25
B
254 264Right-handed alpha
Helix 26
26
B
274 284Right-handed alpha
Helix 27
27
C
12 22Right-handed alpha
Helix 28
28
C
44 52Right-handed alpha
Helix 29
29
C
78 89Right-handed alpha
Helix 30
30
C
109 120Right-handed alpha
Helix 31
31
C
130 138Right-handed alpha
Helix 32
32
C
159 161Right-handed 310
Helix 33
33
C
165 176Right-handed alpha
Helix 34
34
C
185 190Right-handed alpha
Helix 35
35
C
212 217Right-handed 310
Helix 36
36
C
225 236Right-handed alpha
Helix 37
37
C
253 264Right-handed alpha
Helix 38
38
C
274 284Right-handed alpha
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There are 9 sheets in PDB entry 4JGT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
125 128parallel
Strand 3
A
96 100parallel
Strand 4
A
29 33parallel
Strand 5
A
58 59parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
271 272parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
179 182parallel
Strand 3
A
244 247parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
125 128parallel
Strand 3
B
96 100parallel
Strand 4
B
29 33parallel
Strand 5
B
58 59parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
271 272parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
179 182parallel
Strand 3
B
244 247parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
125 128parallel
Strand 3
C
96 100parallel
Strand 4
C
29 33parallel
Strand 5
C
58 59parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 164first strand
Strand 2
C
271 272parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 210first strand
Strand 2
C
179 182parallel
Strand 3
C
244 247parallel
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