Analysis of interatomic Contacts of Structural Units in PDB entry:
4JGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JGZ entry

There are 3 chains in PDB entry 4JGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 62LEU 297
B
 ALA 6ARG 249
C
 GLY 1GLU 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4JGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
79 84Right-handed alpha
Helix 2
2
A
116 124Right-handed alpha
Helix 3
3
A
168 172Right-handed 310
Helix 4
4
A
225 229Right-handed 310
Helix 5
5
B
35 37Right-handed 310
Helix 6
6
B
45 50Right-handed 310
Helix 7
7
B
83 88Right-handed alpha
Helix 8
8
B
90 99Right-handed alpha
Helix 9
9
B
147 152Right-handed alpha
Helix 10
10
B
174 178Right-handed 310
Helix 11
11
C
43 48Right-handed alpha
Helix 12
12
C
58 62Right-handed 310
Helix 13
13
C
64 68Right-handed 310
Helix 14
14
C
94 98Right-handed 310
Helix 15
15
C
99 107Right-handed alpha
Helix 16
16
C
145 151Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 4JGZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
247 263anti-parallel
Strand 3
A
126 140anti-parallel
Strand 4
A
188 192anti-parallel
Strand 5
C
22 23parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
126 140anti-parallel
Strand 3
A
247 263anti-parallel
Strand 4
C
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
178 182anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
188 195anti-parallel
Strand 3
B
101 112anti-parallel
Strand 4
B
232 246anti-parallel
Strand 5
B
64 71anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
188 195parallel
Strand 3
B
101 112anti-parallel
Strand 4
B
204 205anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
21 23anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
212 223anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
180 184anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 53first strand
Strand 2
C
211 218anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
164 174anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 74first strand
Strand 2
C
211 218anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
225 229anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 87first strand
Strand 2
C
193 198anti-parallel
Strand 3
C
130 136anti-parallel
Strand 4
C
154 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 177first strand
Strand 2
C
186 187anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il