Analysis of interatomic Contacts of Structural Units in PDB entry:
4JHC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JHC entry

There are 2 chains in PDB entry 4JHC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2MET 193
B
 PRO 2GLY 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4JHC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 18Right-handed alpha
Helix 2
2
A
19 21Right-handed 310
Helix 3
3
A
40 55Right-handed alpha
Helix 4
4
A
84 96Right-handed alpha
Helix 5
5
A
131 143Right-handed alpha
Helix 6
6
A
155 159Right-handed 310
Helix 7
7
A
168 174Right-handed alpha
Helix 8
8
A
176 187Right-handed alpha
Helix 9
9
B
10 19Right-handed alpha
Helix 10
10
B
40 55Right-handed alpha
Helix 11
11
B
86 96Right-handed alpha
Helix 12
12
B
131 139Right-handed alpha
Helix 13
13
B
155 159Right-handed 310
Helix 14
14
B
168 174Right-handed alpha
Helix 15
15
B
176 187Right-handed alpha
Helix 16
16
B
190 194Right-handed 310
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There are 4 sheets in PDB entry 4JHC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
4 7parallel
Strand 3
A
64 74parallel
Strand 4
A
77 79anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
4 7parallel
Strand 3
A
64 74parallel
Strand 4
A
99 110anti-parallel
Strand 5
A
116 127anti-parallel
Strand 6
A
161 165anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
3 6parallel
Strand 3
B
63 74parallel
Strand 4
B
77 79anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
3 6parallel
Strand 3
B
63 74parallel
Strand 4
B
99 110anti-parallel
Strand 5
B
116 127anti-parallel
Strand 6
B
161 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il