Analysis of interatomic Contacts of Structural Units in PDB entry:
4JHD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JHD entry

There are 6 chains in PDB entry 4JHD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5PHE 375
B
 VAL 5PHE 375
C
 SER 66PRO 146
D
 VAL 5PHE 375
E
 VAL 5PHE 375
F
 SER 66ASN 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 4JHD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 61Right-handed alpha
Helix 2
2
A
78 92Right-handed alpha
Helix 3
3
A
97 101Right-handed 310
Helix 4
4
A
112 126Right-handed alpha
Helix 5
5
A
137 145Right-handed alpha
Helix 6
6
A
172 175Right-handed 310
Helix 7
7
A
181 197Right-handed alpha
Helix 8
8
A
202 217Right-handed alpha
Helix 9
9
A
222 232Right-handed alpha
Helix 10
10
A
252 260Right-handed alpha
Helix 11
11
A
261 262Right-handed 310
Helix 12
12
A
263 268Right-handed 310
Helix 13
13
A
273 284Right-handed alpha
Helix 14
14
A
289 295Right-handed alpha
Helix 15
15
A
301 305Right-handed 310
Helix 16
16
A
308 319Right-handed alpha
Helix 17
17
A
334 336Right-handed 310
Helix 18
18
A
337 348Right-handed alpha
Helix 19
19
A
349 353Right-handed 310
Helix 20
20
A
359 366Right-handed alpha
Helix 21
21
A
368 373Right-handed alpha
Helix 22
22
B
55 61Right-handed alpha
Helix 23
23
B
78 92Right-handed alpha
Helix 24
24
B
97 101Right-handed 310
Helix 25
25
B
112 125Right-handed alpha
Helix 26
26
B
137 145Right-handed alpha
Helix 27
27
B
172 175Right-handed 310
Helix 28
28
B
181 197Right-handed alpha
Helix 29
29
B
202 217Right-handed alpha
Helix 30
30
B
222 232Right-handed alpha
Helix 31
31
B
252 260Right-handed alpha
Helix 32
32
B
261 262Right-handed 310
Helix 33
33
B
263 268Right-handed 310
Helix 34
34
B
273 285Right-handed alpha
Helix 35
35
B
286 295Right-handed alpha
Helix 36
36
B
301 305Right-handed 310
Helix 37
37
B
308 321Right-handed alpha
Helix 38
38
B
334 336Right-handed 310
Helix 39
39
B
337 348Right-handed alpha
Helix 40
40
B
349 353Right-handed 310
Helix 41
41
B
359 366Right-handed alpha
Helix 42
42
B
367 373Right-handed 310
Helix 43
43
C
67 77Right-handed alpha
Helix 44
44
C
103 118Right-handed alpha
Helix 45
45
C
132 137Right-handed alpha
Helix 46
46
D
55 61Right-handed alpha
Helix 47
47
D
78 91Right-handed alpha
Helix 48
48
D
97 101Right-handed 310
Helix 49
49
D
112 126Right-handed alpha
Helix 50
50
D
137 145Right-handed alpha
Helix 51
51
D
181 197Right-handed alpha
Helix 52
52
D
202 217Right-handed alpha
Helix 53
53
D
222 232Right-handed alpha
Helix 54
54
D
252 260Right-handed alpha
Helix 55
55
D
261 262Right-handed 310
Helix 56
56
D
263 268Right-handed 310
Helix 57
57
D
273 284Right-handed alpha
Helix 58
58
D
285 288Right-handed 310
Helix 59
59
D
289 295Right-handed alpha
Helix 60
60
D
301 305Right-handed 310
Helix 61
61
D
308 321Right-handed alpha
Helix 62
62
D
337 348Right-handed alpha
Helix 63
63
D
349 353Right-handed 310
Helix 64
64
D
359 366Right-handed alpha
Helix 65
65
D
368 373Right-handed alpha
Helix 66
66
E
55 61Right-handed alpha
Helix 67
67
E
78 92Right-handed alpha
Helix 68
68
E
97 101Right-handed 310
Helix 69
69
E
112 126Right-handed alpha
Helix 70
70
E
137 144Right-handed alpha
Helix 71
71
E
172 175Right-handed 310
Helix 72
72
E
181 197Right-handed alpha
Helix 73
73
E
202 217Right-handed alpha
Helix 74
74
E
222 233Right-handed alpha
Helix 75
75
E
252 257Right-handed alpha
Helix 76
76
E
258 262Right-handed 310
Helix 77
77
E
263 268Right-handed 310
Helix 78
78
E
273 284Right-handed alpha
Helix 79
79
E
286 296Right-handed alpha
Helix 80
80
E
301 306Right-handed 310
Helix 81
81
E
308 321Right-handed alpha
Helix 82
82
E
334 336Right-handed 310
Helix 83
83
E
337 348Right-handed alpha
Helix 84
84
E
349 353Right-handed 310
Helix 85
85
E
359 366Right-handed alpha
Helix 86
86
E
367 374Right-handed 310
Helix 87
87
F
67 77Right-handed alpha
Helix 88
88
F
103 118Right-handed alpha
Helix 89
89
F
129 140Right-handed alpha
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There are 24 sheets in PDB entry 4JHD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
65 68anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
176 178anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
150 155anti-parallel
Strand 4
A
297 300parallel
Strand 5
A
329 330parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
248 250anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
16 21anti-parallel
Strand 3
B
8 12anti-parallel
Strand 4
B
103 107parallel
Strand 5
B
131 136parallel
Strand 6
B
357 358anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
65 68anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
75 76anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
160 166anti-parallel
Strand 3
B
176 178anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
160 166anti-parallel
Strand 3
B
150 155anti-parallel
Strand 4
B
297 300parallel
Strand 5
B
329 330parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
248 250anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 32first strand
Strand 2
D
16 21anti-parallel
Strand 3
D
8 12anti-parallel
Strand 4
D
103 107parallel
Strand 5
D
131 136parallel
Strand 6
D
357 358anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 54first strand
Strand 2
D
35 38anti-parallel
Strand 3
D
65 68anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 72first strand
Strand 2
D
75 76anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 170first strand
Strand 2
D
160 166anti-parallel
Strand 3
D
176 178anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 170first strand
Strand 2
D
160 166anti-parallel
Strand 3
D
150 155anti-parallel
Strand 4
D
297 300parallel
Strand 5
D
329 330parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
238 240first strand
Strand 2
D
248 250anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 32first strand
Strand 2
E
16 21anti-parallel
Strand 3
E
8 12anti-parallel
Strand 4
E
103 107parallel
Strand 5
E
131 136parallel
Strand 6
E
357 358anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 54first strand
Strand 2
E
35 38anti-parallel
Strand 3
E
65 68anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
71 72first strand
Strand 2
E
75 76anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
169 170first strand
Strand 2
E
160 166anti-parallel
Strand 3
E
176 178anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
169 170first strand
Strand 2
E
160 166anti-parallel
Strand 3
E
150 155anti-parallel
Strand 4
E
297 300parallel
Strand 5
E
329 330parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
238 240first strand
Strand 2
E
248 250anti-parallel
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