Analysis of interatomic Contacts of Structural Units in PDB entry:
4JHM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JHM entry

There are 4 chains in PDB entry 4JHM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	GLY 376
B	GLU 2	GLY 376
C	GLU 2	GLU 375
D	GLU 2	PRO 149

There are116 helices in PDB entry 4JHM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	62	72	Right-handed alpha
Helix 2	2	A	73	76	Right-handed 310
Helix 3	3	A	82	91	Right-handed alpha
Helix 4	4	A	97	118	Right-handed alpha
Helix 5	5	A	120	126	Right-handed alpha
Helix 6	6	A	143	145	Right-handed 310
Helix 7	7	A	146	158	Right-handed alpha
Helix 8	8	A	169	185	Right-handed alpha
Helix 9	9	A	200	214	Right-handed alpha
Helix 10	10	A	227	238	Right-handed alpha
Helix 11	11	A	251	261	Right-handed alpha
Helix 12	12	A	276	290	Right-handed alpha
Helix 13	13	A	301	315	Right-handed alpha
Helix 14	14	A	327	332	Right-handed 310
Helix 15	15	A	359	366	Right-handed alpha
Helix 16	16	B	62	72	Right-handed alpha
Helix 17	17	B	73	76	Right-handed 310
Helix 18	18	B	82	92	Right-handed alpha
Helix 19	19	B	97	118	Right-handed alpha
Helix 20	20	B	120	126	Right-handed alpha
Helix 21	21	B	143	145	Right-handed 310
Helix 22	22	B	146	158	Right-handed alpha
Helix 23	23	B	169	185	Right-handed alpha
Helix 24	24	B	200	214	Right-handed alpha
Helix 25	25	B	227	238	Right-handed alpha
Helix 26	26	B	251	261	Right-handed alpha
Helix 27	27	B	270	275	Right-handed alpha
Helix 28	28	B	276	290	Right-handed alpha
Helix 29	29	B	301	315	Right-handed alpha
Helix 30	30	B	327	332	Right-handed 310
Helix 31	31	B	359	366	Right-handed alpha
Helix 32	32	C	62	72	Right-handed alpha
Helix 33	33	C	73	76	Right-handed 310
Helix 34	34	C	82	92	Right-handed alpha
Helix 35	35	C	97	118	Right-handed alpha
Helix 36	36	C	120	126	Right-handed alpha
Helix 37	37	C	146	158	Right-handed alpha
Helix 38	38	C	169	185	Right-handed alpha
Helix 39	39	C	200	215	Right-handed alpha
Helix 40	40	C	227	238	Right-handed alpha
Helix 41	41	C	251	261	Right-handed alpha
Helix 42	42	C	276	290	Right-handed alpha
Helix 43	43	C	301	315	Right-handed alpha
Helix 44	44	C	327	332	Right-handed 310
Helix 45	45	C	359	366	Right-handed alpha
Helix 46	46	D	62	72	Right-handed alpha
Helix 47	47	D	73	76	Right-handed 310
Helix 48	48	D	82	93	Right-handed alpha
Helix 49	49	D	97	118	Right-handed alpha
Helix 50	50	D	120	125	Right-handed alpha
Helix 51	51	D	146	158	Right-handed alpha
Helix 52	52	D	169	185	Right-handed alpha
Helix 53	53	D	200	214	Right-handed alpha
Helix 54	54	D	227	238	Right-handed alpha
Helix 55	55	D	251	261	Right-handed alpha
Helix 56	56	D	270	275	Right-handed alpha
Helix 57	57	D	276	290	Right-handed alpha
Helix 58	58	D	301	315	Right-handed alpha
Helix 59	59	D	327	332	Right-handed 310
Helix 60	60	D	359	366	Right-handed alpha
Helix 61	61	E	62	72	Right-handed alpha
Helix 62	62	E	73	76	Right-handed 310
Helix 63	63	E	82	92	Right-handed alpha
Helix 64	64	E	97	117	Right-handed alpha
Helix 65	65	E	120	126	Right-handed alpha
Helix 66	66	E	146	158	Right-handed alpha
Helix 67	67	E	169	185	Right-handed alpha
Helix 68	68	E	200	214	Right-handed alpha
Helix 69	69	E	227	238	Right-handed alpha
Helix 70	70	E	251	261	Right-handed alpha
Helix 71	71	E	276	290	Right-handed alpha
Helix 72	72	E	301	315	Right-handed alpha
Helix 73	73	E	327	332	Right-handed 310
Helix 74	74	E	359	366	Right-handed alpha
Helix 75	75	F	62	72	Right-handed alpha
Helix 76	76	F	73	76	Right-handed 310
Helix 77	77	F	82	92	Right-handed alpha
Helix 78	78	F	97	118	Right-handed alpha
Helix 79	79	F	120	126	Right-handed alpha
Helix 80	80	F	143	158	Right-handed alpha
Helix 81	81	F	169	185	Right-handed alpha
Helix 82	82	F	200	215	Right-handed alpha
Helix 83	83	F	227	237	Right-handed alpha
Helix 84	84	F	251	261	Right-handed alpha
Helix 85	85	F	275	290	Right-handed alpha
Helix 86	86	F	301	315	Right-handed alpha
Helix 87	87	F	327	332	Right-handed 310
Helix 88	88	F	359	366	Right-handed alpha
Helix 89	89	G	62	72	Right-handed alpha
Helix 90	90	G	73	76	Right-handed 310
Helix 91	91	G	82	92	Right-handed alpha
Helix 92	92	G	97	118	Right-handed alpha
Helix 93	93	G	120	126	Right-handed alpha
Helix 94	94	G	146	158	Right-handed alpha
Helix 95	95	G	169	185	Right-handed alpha
Helix 96	96	G	200	214	Right-handed alpha
Helix 97	97	G	227	237	Right-handed alpha
Helix 98	98	G	251	261	Right-handed alpha
Helix 99	99	G	276	290	Right-handed alpha
Helix 100	100	G	301	314	Right-handed alpha
Helix 101	101	G	327	332	Right-handed 310
Helix 102	102	G	359	366	Right-handed alpha
Helix 103	103	H	62	70	Right-handed alpha
Helix 104	104	H	71	76	Right-handed 310
Helix 105	105	H	82	93	Right-handed alpha
Helix 106	106	H	97	118	Right-handed alpha
Helix 107	107	H	120	126	Right-handed alpha
Helix 108	108	H	146	158	Right-handed alpha
Helix 109	109	H	169	185	Right-handed alpha
Helix 110	110	H	200	214	Right-handed alpha
Helix 111	111	H	227	238	Right-handed alpha
Helix 112	112	H	251	261	Right-handed alpha
Helix 113	113	H	276	290	Right-handed alpha
Helix 114	114	H	301	315	Right-handed alpha
Helix 115	115	H	327	331	Right-handed 310
Helix 116	116	H	359	366	Right-handed alpha

There are 28 sheets in PDB entry 4JHM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	56	first strand
Strand 2	A	32	42	anti-parallel
Strand 3	A	6	14	anti-parallel
Strand 4	A	367	374	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	243	first strand
Strand 2	A	218	220	parallel
Strand 3	A	190	194	parallel
Strand 4	A	161	165	parallel
Strand 5	A	131	137	parallel
Strand 6	A	321	324	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	243	first strand
Strand 2	A	218	220	parallel
Strand 3	A	190	194	parallel
Strand 4	A	161	165	parallel
Strand 5	A	131	137	parallel
Strand 6	A	345	347	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	56	first strand
Strand 2	B	32	42	anti-parallel
Strand 3	B	6	14	anti-parallel
Strand 4	B	367	374	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	243	first strand
Strand 2	B	218	220	parallel
Strand 3	B	190	194	parallel
Strand 4	B	161	165	parallel
Strand 5	B	131	137	parallel
Strand 6	B	321	324	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	243	first strand
Strand 2	B	218	220	parallel
Strand 3	B	190	194	parallel
Strand 4	B	161	165	parallel
Strand 5	B	131	137	parallel
Strand 6	B	345	347	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	32	42	anti-parallel
Strand 3	C	51	56	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	32	42	anti-parallel
Strand 3	C	6	14	anti-parallel
Strand 4	C	367	374	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	218	220	parallel
Strand 3	C	190	194	parallel
Strand 4	C	161	165	parallel
Strand 5	C	131	137	parallel
Strand 6	C	321	324	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	218	220	parallel
Strand 3	C	190	194	parallel
Strand 4	C	161	165	parallel
Strand 5	C	131	137	parallel
Strand 6	C	345	347	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	269	first strand
Strand 2	C	294	296	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	56	first strand
Strand 2	D	32	42	anti-parallel
Strand 3	D	6	14	anti-parallel
Strand 4	D	367	373	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	243	first strand
Strand 2	D	218	220	parallel
Strand 3	D	190	194	parallel
Strand 4	D	161	165	parallel
Strand 5	D	131	137	parallel
Strand 6	D	321	324	parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	243	first strand
Strand 2	D	218	220	parallel
Strand 3	D	190	194	parallel
Strand 4	D	161	165	parallel
Strand 5	D	131	137	parallel
Strand 6	D	345	347	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	269	first strand
Strand 2	D	294	296	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	56	first strand
Strand 2	E	32	42	anti-parallel
Strand 3	E	6	14	anti-parallel
Strand 4	E	367	374	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	241	243	first strand
Strand 2	E	218	220	parallel
Strand 3	E	190	194	parallel
Strand 4	E	161	165	parallel
Strand 5	E	131	137	parallel
Strand 6	E	321	324	parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	241	243	first strand
Strand 2	E	218	220	parallel
Strand 3	E	190	194	parallel
Strand 4	E	161	165	parallel
Strand 5	E	131	137	parallel
Strand 6	E	345	347	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	269	first strand
Strand 2	E	294	296	parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	56	first strand
Strand 2	F	32	42	anti-parallel
Strand 3	F	6	14	anti-parallel
Strand 4	F	367	374	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	241	243	first strand
Strand 2	F	218	220	parallel
Strand 3	F	190	194	parallel
Strand 4	F	161	165	parallel
Strand 5	F	131	137	parallel
Strand 6	F	321	324	parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	241	243	first strand
Strand 2	F	218	220	parallel
Strand 3	F	190	194	parallel
Strand 4	F	161	165	parallel
Strand 5	F	131	137	parallel
Strand 6	F	345	347	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	56	first strand
Strand 2	G	32	42	anti-parallel
Strand 3	G	6	14	anti-parallel
Strand 4	G	367	374	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	241	243	first strand
Strand 2	G	218	220	parallel
Strand 3	G	190	194	parallel
Strand 4	G	161	165	parallel
Strand 5	G	131	137	parallel
Strand 6	G	321	324	parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	241	243	first strand
Strand 2	G	218	220	parallel
Strand 3	G	190	194	parallel
Strand 4	G	161	165	parallel
Strand 5	G	131	137	parallel
Strand 6	G	345	347	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	56	first strand
Strand 2	H	32	42	anti-parallel
Strand 3	H	6	14	anti-parallel
Strand 4	H	367	374	anti-parallel

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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	241	243	first strand
Strand 2	H	218	220	parallel
Strand 3	H	190	194	parallel
Strand 4	H	161	165	parallel
Strand 5	H	131	137	parallel
Strand 6	H	321	324	parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	241	243	first strand
Strand 2	H	218	220	parallel
Strand 3	H	190	194	parallel
Strand 4	H	161	165	parallel
Strand 5	H	131	137	parallel
Strand 6	H	345	347	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JHM

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JHM