Analysis of interatomic Contacts of Structural Units in PDB entry:
4JHV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JHV entry

There is 1 chain in PDB entry 4JHV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1GLN 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4JHV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 58Right-handed 310
Helix 2
2
A
73 77Right-handed 310
Helix 3
3
A
114 119Right-handed 310
Helix 4
4
A
133 137Right-handed 310
Helix 5
5
A
141 143Right-handed 310
Helix 6
6
A
269 273Right-handed 310
Helix 7
7
A
300 304Right-handed 310
Helix 8
8
A
349 356Right-handed alpha
Helix 9
9
A
360 364Right-handed 310
Helix 10
10
A
452 458Right-handed alpha
Helix 11
11
A
470 475Right-handed alpha
Helix 12
12
A
478 491Right-handed alpha
Helix 13
13
A
492 496Right-handed 310
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There are 7 sheets in PDB entry 4JHV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
5 15anti-parallel
Strand 3
A
43 50parallel
Strand 4
A
92 98anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
121 127parallel
Strand 3
A
104 110anti-parallel
Strand 4
A
63 66anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
145 151anti-parallel
Strand 3
A
194 201parallel
Strand 4
A
242 248anti-parallel
Strand 5
A
217 222anti-parallel
Strand 6
A
225 232anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
275 280parallel
Strand 3
A
255 262anti-parallel
Strand 4
A
208 212anti-parallel
Strand 5
A
235 237anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
378 384parallel
Strand 3
A
433 439anti-parallel
Strand 4
A
403 407anti-parallel
Strand 5
A
421 422anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
335 338anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 373first strand
Strand 2
A
461 466parallel
Strand 3
A
444 450anti-parallel
Strand 4
A
395 398anti-parallel
Strand 5
A
424 426anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il