Analysis of interatomic Contacts of Structural Units in PDB entry:
4JIC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JIC entry

There are 3 chains in PDB entry 4JIC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLN 371
B
 THR 2GLN 371
C
 THR 2GLN 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 4JIC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 33Right-handed 310
Helix 2
2
A
35 44Right-handed alpha
Helix 3
3
A
73 90Right-handed alpha
Helix 4
4
A
106 114Right-handed 310
Helix 5
5
A
149 170Right-handed alpha
Helix 6
6
A
183 190Right-handed alpha
Helix 7
7
A
203 208Right-handed alpha
Helix 8
8
A
208 223Right-handed alpha
Helix 9
9
A
236 240Right-handed 310
Helix 10
10
A
244 257Right-handed alpha
Helix 11
11
A
285 296Right-handed alpha
Helix 12
12
A
309 319Right-handed alpha
Helix 13
13
A
328 334Right-handed alpha
Helix 14
14
A
336 344Right-handed alpha
Helix 15
15
A
351 355Right-handed 310
Helix 16
16
B
29 33Right-handed 310
Helix 17
17
B
35 44Right-handed alpha
Helix 18
18
B
73 90Right-handed alpha
Helix 19
19
B
106 114Right-handed 310
Helix 20
20
B
149 170Right-handed alpha
Helix 21
21
B
183 190Right-handed alpha
Helix 22
22
B
203 208Right-handed alpha
Helix 23
23
B
208 223Right-handed alpha
Helix 24
24
B
236 240Right-handed 310
Helix 25
25
B
244 257Right-handed alpha
Helix 26
26
B
285 296Right-handed alpha
Helix 27
27
B
309 319Right-handed alpha
Helix 28
28
B
328 334Right-handed alpha
Helix 29
29
B
336 344Right-handed alpha
Helix 30
30
B
351 355Right-handed 310
Helix 31
31
C
29 33Right-handed 310
Helix 32
32
C
35 44Right-handed alpha
Helix 33
33
C
73 90Right-handed alpha
Helix 34
34
C
106 114Right-handed 310
Helix 35
35
C
149 170Right-handed alpha
Helix 36
36
C
183 190Right-handed alpha
Helix 37
37
C
203 208Right-handed alpha
Helix 38
38
C
208 223Right-handed alpha
Helix 39
39
C
236 240Right-handed 310
Helix 40
40
C
244 257Right-handed alpha
Helix 41
41
C
285 296Right-handed alpha
Helix 42
42
C
309 319Right-handed alpha
Helix 43
43
C
328 334Right-handed alpha
Helix 44
44
C
336 343Right-handed alpha
Helix 45
45
C
351 355Right-handed 310
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There are 12 sheets in PDB entry 4JIC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
50 57parallel
Strand 3
A
94 99parallel
Strand 4
A
174 178parallel
Strand 5
A
227 231parallel
Strand 6
A
263 267parallel
Strand 7
A
301 305parallel
Strand 8
A
324 327parallel
Strand 9
A
19 21parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
146 147parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
140 141anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
13 15anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
50 57parallel
Strand 3
B
94 99parallel
Strand 4
B
174 178parallel
Strand 5
B
227 231parallel
Strand 6
B
263 267parallel
Strand 7
B
301 305parallel
Strand 8
B
324 327parallel
Strand 9
B
19 21parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
146 147parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
137 141anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
13 15anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 21first strand
Strand 2
C
50 57parallel
Strand 3
C
94 99parallel
Strand 4
C
174 178parallel
Strand 5
C
227 231parallel
Strand 6
C
263 267parallel
Strand 7
C
301 305parallel
Strand 8
C
324 327parallel
Strand 9
C
19 21parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 118first strand
Strand 2
C
146 147parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 131first strand
Strand 2
C
137 141anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il