Analysis of interatomic Contacts of Structural Units in PDB entry:
4JID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JID entry

There are 2 chains in PDB entry 4JID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2LEU 243
B
 SER 56LEU 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4JID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 97Right-handed 310
Helix 2
2
A
100 116Right-handed alpha
Helix 3
3
A
128 141Right-handed alpha
Helix 4
4
A
158 163Right-handed 310
Helix 5
5
A
170 174Right-handed 310
Helix 6
6
A
178 183Right-handed 310
Helix 7
7
A
184 194Right-handed alpha
Helix 8
8
A
195 197Right-handed 310
Helix 9
9
A
204 206Right-handed 310
Helix 10
10
A
207 212Right-handed alpha
Helix 11
11
A
226 234Right-handed alpha
Helix 12
12
A
236 242Right-handed alpha
Helix 13
13
B
93 97Right-handed 310
Helix 14
14
B
100 116Right-handed alpha
Helix 15
15
B
128 139Right-handed alpha
Helix 16
16
B
158 163Right-handed 310
Helix 17
17
B
170 174Right-handed 310
Helix 18
18
B
178 183Right-handed 310
Helix 19
19
B
184 194Right-handed alpha
Helix 20
20
B
195 197Right-handed 310
Helix 21
21
B
207 212Right-handed alpha
Helix 22
22
B
225 234Right-handed alpha
Helix 23
23
B
236 241Right-handed alpha
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There are 4 sheets in PDB entry 4JID. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
98 99anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
165 169anti-parallel
Strand 3
A
219 222anti-parallel
Strand 4
A
199 201anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
98 99anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
165 169anti-parallel
Strand 3
B
219 222anti-parallel
Strand 4
B
199 201anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il