Analysis of interatomic Contacts of Structural Units in PDB entry:
4JIH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JIH entry

There are 2 chains in PDB entry 4JIH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ALA 298
A
 ASN 300TYR 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4JIH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 39Right-handed alpha
Helix 2
2
A
46 50Right-handed 310
Helix 3
3
A
51 65Right-handed alpha
Helix 4
4
A
69 73Right-handed 310
Helix 5
5
A
80 84Right-handed 310
Helix 6
6
A
85 100Right-handed alpha
Helix 7
7
A
137 151Right-handed alpha
Helix 8
8
A
163 172Right-handed alpha
Helix 9
9
A
193 203Right-handed alpha
Helix 10
10
A
227 230Right-handed 310
Helix 11
11
A
231 241Right-handed alpha
Helix 12
12
A
244 255Right-handed alpha
Helix 13
13
A
266 273Right-handed alpha
Helix 14
14
A
282 291Right-handed alpha
Helix 15
15
A
310 314Right-handed 310
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There are 2 sheets in PDB entry 4JIH. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
12 14anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
42 44parallel
Strand 3
A
74 79parallel
Strand 4
A
105 110parallel
Strand 5
A
154 160parallel
Strand 6
A
182 186parallel
Strand 7
A
206 210parallel
Strand 8
A
259 260parallel
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