Analysis of interatomic Contacts of Structural Units in PDB entry:
4JIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JIJ entry

There are 6 chains in PDB entry 4JIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 PRO 2GLY 4
P
 ALA 7ARG 8
A
 GLY 106GLY 269
Q
 PRO 2GLY 4
Q
 ALA 7ARG 8
B
 GLY 106GLY 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4JIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
133 150Right-handed alpha
Helix 2
2
A
220 232Right-handed alpha
Helix 3
3
A
257 269Right-handed alpha
Helix 4
4
B
133 151Right-handed alpha
Helix 5
5
B
220 232Right-handed alpha
Helix 6
6
B
257 269Right-handed alpha
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There are 4 sheets in PDB entry 4JIJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
3 6first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
202 205anti-parallel
Strand 4
A
166 171parallel
Strand 5
A
120 125parallel
Strand 6
A
155 158parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
218 219parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
3 6first strand
Strand 2
B
187 191anti-parallel
Strand 3
B
202 205anti-parallel
Strand 4
B
166 171parallel
Strand 5
B
120 125parallel
Strand 6
B
155 158parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
B
218 219parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il