Analysis of interatomic Contacts of Structural Units in PDB entry:
4JIO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JIO entry

There are 3 chains in PDB entry 4JIO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 367SER 702
B
 PHE 368GLU 704
U
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4JIO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
369 408Right-handed alpha
Helix 2
2
A
408 421Right-handed alpha
Helix 3
3
A
432 450Right-handed alpha
Helix 4
4
A
457 474Right-handed alpha
Helix 5
5
A
480 502Right-handed alpha
Helix 6
6
A
504 515Right-handed alpha
Helix 7
7
A
515 526Right-handed alpha
Helix 8
8
A
545 582Right-handed alpha
Helix 9
9
A
587 591Right-handed 310
Helix 10
10
A
603 611Right-handed alpha
Helix 11
11
A
613 646Right-handed alpha
Helix 12
12
A
652 666Right-handed alpha
Helix 13
13
A
667 701Right-handed alpha
Helix 14
14
B
369 408Right-handed alpha
Helix 15
15
B
408 421Right-handed alpha
Helix 16
16
B
430 451Right-handed alpha
Helix 17
17
B
454 476Right-handed alpha
Helix 18
18
B
480 505Right-handed alpha
Helix 19
19
B
505 513Right-handed alpha
Helix 20
20
B
515 528Right-handed alpha
Helix 21
21
B
545 582Right-handed alpha
Helix 22
22
B
603 611Right-handed alpha
Helix 23
23
B
613 627Right-handed alpha
Helix 24
24
B
628 645Right-handed alpha
Helix 25
25
B
652 702Right-handed alpha
Helix 26
26
U
22 29Right-handed alpha
Helix 27
27
U
30 32Right-handed 310
Helix 28
28
U
37 39Right-handed 310
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There is 1 sheet ( A) in PDB entry 4JIO.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
12 16first strand
Strand 2
U
2 6anti-parallel
Strand 3
U
66 71parallel
Strand 4
U
41 45anti-parallel
Strand 5
U
48 49anti-parallel
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